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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:535.7 nTPM
HPA Brain:738.8 nTPM
GTEx:535.7 nTPM
FANTOM5:581.2 Scaled Tags Per Million
Pig:571.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

738.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 672.4
1981 Female, age 72, midline 743.5
2565 Male, age 75, midline 723.5
2194 Female, age 79, both hemispheres 715.5
2816 Male, age 47, midline 620.4
2048 Male, age 55, midline 558.9
Cervical spinal cord, dorsal horn
nTPM: 738.8
2296 Male, age 66, both hemispheres 867.6
2173 Female, age 72, unknown 804.2
2069 Male, age 47, both hemispheres 778.7
2297 Male, age 75, both hemispheres 757.5
1877 Male, age 55, unknown 649.4
2721 Male, age 90, both hemispheres 575.1
Cervical spinal cord, ventral horn
nTPM: 699.5
2480 Male, age 75, both hemispheres 822.0
2068 Male, age 55, unknown 716.5
2809 Male, age 90, both hemispheres 709.2
2295 Male, age 66, both hemispheres 681.3
2820 Female, age 79, both hemispheres 654.2
2098 Female, age 72, unknown 613.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

535.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 535.7
Samples: 204

Max nTPM: 928.0
Min nTPM: 266.8
Std nTPM: 101.2
Median nTPM: 535.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 928.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 808.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 807.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 768.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 766.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 736.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 735.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 728.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 710.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 702.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 698.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 690.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 690.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 684.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 681.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 679.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 674.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 671.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 669.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 668.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 665.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 663.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 660.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 659.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 656.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 653.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 644.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 644.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 643.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 643.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 628.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 627.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 626.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 626.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 623.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 621.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 621.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 617.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 612.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 612.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 608.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 607.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 606.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 603.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 601.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 600.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 600.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 599.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 597.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 596.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 594.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 594.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 589.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 588.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 587.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 586.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 585.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 585.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 583.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 582.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 582.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 582.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 581.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 580.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 579.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 579.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 579.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 578.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 577.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 576.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 576.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 576.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 575.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 569.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 569.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 568.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 567.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 566.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 561.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 561.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 560.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 560.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 557.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 555.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 555.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 554.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 553.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 552.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 552.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 548.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 548.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 547.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 543.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 543.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 542.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 542.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 540.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 540.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 540.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 539.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 537.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 536.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 535.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 532.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 531.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 527.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 525.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 525.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 525.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 524.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 523.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 522.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 518.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 516.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 513.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 512.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 510.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 509.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 508.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 504.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 503.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 503.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 502.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 501.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 501.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 501.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 500.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 500.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 500.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 499.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 499.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 498.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 497.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 497.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 496.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 493.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 491.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 489.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 489.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 488.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 487.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 486.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 485.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 483.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 483.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 481.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 481.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 477.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 477.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 476.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 471.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 471.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 467.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 467.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 462.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 462.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 461.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 461.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 460.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 454.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 454.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 452.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 450.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 450.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 449.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 448.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 448.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 447.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 446.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 445.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 439.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 438.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 437.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 436.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 436.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 435.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 434.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 432.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 427.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 426.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 425.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 421.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 415.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 414.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 409.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 400.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 400.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 400.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 400.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 399.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 395.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 388.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 386.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 382.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 382.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 375.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 365.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 360.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 352.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 342.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 297.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 295.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 284.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 266.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

581.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 581.2
FF:10181-103D1 60 years, female 609.0
FF:10159-103A6 76 years, female 553.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

571.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 532.2
Samples: 4

Max nTPM: 569.6
Min nTPM: 499.3
Sample A Female 569.6
Sample B Female 499.3
Sample C Male 509.4
Sample D Male 550.4
Ventral spinal cord
nTPM: 571.6
Samples: 4

Max nTPM: 598.7
Min nTPM: 554.6
Sample A Female 598.7
Sample B Female 554.6
Sample C Male 558.5
Sample D Male 574.7

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