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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • RPL13A
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS
MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:389.8 nTPM
GTEx:1118.7 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Macaque:184.7 nTPM
Pig:8.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

389.8
Sample id Sample description nTPM
Substantia nigra
nTPM: 389.8
2699 Male, age 18, unknown 507.1
1851 Male, age 51, unknown 477.2
2665 Male, age 74, both hemispheres 468.1
2590 Female, age 75, unknown 403.0
1916 Female, age 42, unknown 388.0
2583 Male, age 75, right hemisphere 374.3
2409 Female, age 72, unknown 347.9
1889 Female, age 72, unknown 327.4
1941 Male, age 53, unknown 309.0
2241 Male, age 72, unknown 296.4

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1118.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1118.7
Samples: 183

Max nTPM: 2631.6
Min nTPM: 366.6
Std nTPM: 384.3
Median nTPM: 1080.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2631.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2476.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2009.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2003.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1993.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1988.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1979.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1845.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1834.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1823.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1822.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1769.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1768.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1761.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1750.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1694.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1693.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1689.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1684.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1644.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1601.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1583.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1572.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1571.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1566.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1551.6
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1542.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1461.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1461.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1459.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1448.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1431.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1410.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1396.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1396.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1395.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1389.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1386.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1378.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1374.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1374.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1372.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1372.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1351.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1318.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1298.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1298.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1292.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1286.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1280.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1279.4
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1263.5
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1261.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1261.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1260.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1246.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1241.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1240.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1239.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1233.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1232.4
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1225.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1223.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1218.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1216.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1216.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1216.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1215.4
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1210.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1198.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1196.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1194.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1186.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1183.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1178.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1173.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1169.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1165.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1152.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1142.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1141.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1116.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1111.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 1109.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1103.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1097.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1090.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1088.0
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1087.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1083.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1080.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1080.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1078.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1076.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1075.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1070.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1070.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1065.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1057.1
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1057.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1052.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1047.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1030.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1020.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1008.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1004.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 990.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 985.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 980.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 968.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 968.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 951.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 942.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 941.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 933.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 923.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 920.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 914.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 912.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 907.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 903.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 898.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 897.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 895.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 894.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 886.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 883.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 879.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 876.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 864.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 863.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 863.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 858.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 849.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 837.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 832.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 827.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 823.5
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 813.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 805.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 796.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 793.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 791.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 789.6
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 784.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 784.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 778.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 776.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 773.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 769.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 759.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 757.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 756.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 749.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 739.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 737.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 734.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 731.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 731.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 728.3
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 726.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 721.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 709.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 706.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 702.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 690.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 681.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 680.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 670.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 670.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 665.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 662.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 649.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 612.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 604.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 600.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 563.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 557.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 533.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 460.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 446.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 445.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 366.6
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 184.7
Samples: 1

Max nTPM: 184.7
Min nTPM: 184.7
Sample A 184.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.9
Samples: 3

Max nTPM: 9.9
Min nTPM: 6.7
Sample A Female 9.9
Sample B Female 7.2
Sample C Male 6.7

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