A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
37.6
nTPM
Schmiedel:
101.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
Memory B-cell nTPM: 5.1
Samples: 6
Max nTPM: 10.9
Min nTPM: 2.3
P10809_1017
5.9
P10809_1025
2.3
P10809_1044
4.8
P10809_1063
10.9
P10809_1092
4.6
P10809_1105
2.4
Naive B-cell nTPM: 10.3
Samples: 6
Max nTPM: 18.6
Min nTPM: 5.4
P10809_1011
18.6
P10809_1029
10.5
P10809_1048
5.4
P10809_1067
10.6
P10809_1091
8.7
P10809_1104
7.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27.2
Samples: 4
Max nTPM: 36.8
Min nTPM: 21.4
RHH5310_R3677
21.4
RHH5218_R3590
28.1
RHH5247_R3619
22.6
RHH5276_R3648
36.8
Naive B-cell nTPM: 37.6
Samples: 4
Max nTPM: 55.5
Min nTPM: 17.1
RHH5308_R3675
32.2
RHH5216_R3588
17.1
RHH5245_R3617
55.5
RHH5274_R3646
45.5
Non-switched memory B-cell nTPM: 25.1
Samples: 4
Max nTPM: 26.8
Min nTPM: 22.4
RHH5309_R3676
24.6
RHH5217_R3589
26.8
RHH5246_R3618
22.4
RHH5275_R3647
26.4
Plasmablast nTPM: 13.6
Samples: 4
Max nTPM: 19.1
Min nTPM: 8.2
RHH5312_R3679
18.7
RHH5220_R3592
8.2
RHH5249_R3621
8.5
RHH5278_R3650
19.1
Switched memory B-cell nTPM: 34.7
Samples: 4
Max nTPM: 40.8
Min nTPM: 26.2
RHH5311_R3678
32.3
RHH5219_R3591
26.2
RHH5248_R3620
40.8
RHH5277_R3649
39.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.0
Schmiedel sample id
TPM
Naive B-cell TPM: 101.0
Samples: 91
Max TPM: 138.4
Min TPM: 71.0
B_CELL_NAIVE_1
138.4
B_CELL_NAIVE_2
125.4
B_CELL_NAIVE_3
124.1
B_CELL_NAIVE_4
123.9
B_CELL_NAIVE_5
122.2
B_CELL_NAIVE_6
121.4
B_CELL_NAIVE_7
121.0
B_CELL_NAIVE_8
117.4
B_CELL_NAIVE_9
117.3
B_CELL_NAIVE_10
117.1
B_CELL_NAIVE_11
116.2
B_CELL_NAIVE_12
114.2
B_CELL_NAIVE_13
114.1
B_CELL_NAIVE_14
113.5
B_CELL_NAIVE_15
112.7
B_CELL_NAIVE_16
112.4
B_CELL_NAIVE_17
111.9
B_CELL_NAIVE_18
111.7
B_CELL_NAIVE_19
111.7
B_CELL_NAIVE_20
111.4
B_CELL_NAIVE_21
111.4
B_CELL_NAIVE_22
111.3
B_CELL_NAIVE_23
110.6
B_CELL_NAIVE_24
110.3
B_CELL_NAIVE_25
110.0
B_CELL_NAIVE_26
109.8
B_CELL_NAIVE_27
109.3
B_CELL_NAIVE_28
109.3
B_CELL_NAIVE_29
108.0
B_CELL_NAIVE_30
107.5
B_CELL_NAIVE_31
107.4
B_CELL_NAIVE_32
107.4
B_CELL_NAIVE_33
106.4
B_CELL_NAIVE_34
105.1
B_CELL_NAIVE_35
105.0
B_CELL_NAIVE_36
105.0
B_CELL_NAIVE_37
104.9
B_CELL_NAIVE_38
104.9
B_CELL_NAIVE_39
104.8
B_CELL_NAIVE_40
104.7
B_CELL_NAIVE_41
104.4
B_CELL_NAIVE_42
104.3
B_CELL_NAIVE_43
104.0
B_CELL_NAIVE_44
104.0
B_CELL_NAIVE_45
103.0
B_CELL_NAIVE_46
102.7
B_CELL_NAIVE_47
102.3
B_CELL_NAIVE_48
102.2
B_CELL_NAIVE_49
101.7
B_CELL_NAIVE_50
101.3
B_CELL_NAIVE_51
100.8
B_CELL_NAIVE_52
100.6
B_CELL_NAIVE_53
100.3
B_CELL_NAIVE_54
100.3
B_CELL_NAIVE_55
99.8
B_CELL_NAIVE_56
99.2
B_CELL_NAIVE_57
98.3
B_CELL_NAIVE_58
97.9
B_CELL_NAIVE_59
96.7
B_CELL_NAIVE_60
96.2
B_CELL_NAIVE_61
96.2
B_CELL_NAIVE_62
96.0
B_CELL_NAIVE_63
95.5
B_CELL_NAIVE_64
95.2
B_CELL_NAIVE_65
94.9
B_CELL_NAIVE_66
94.4
B_CELL_NAIVE_67
94.3
B_CELL_NAIVE_68
94.0
B_CELL_NAIVE_69
92.0
B_CELL_NAIVE_70
91.6
B_CELL_NAIVE_71
90.1
B_CELL_NAIVE_72
89.5
B_CELL_NAIVE_73
88.8
B_CELL_NAIVE_74
88.7
B_CELL_NAIVE_75
88.7
B_CELL_NAIVE_76
88.6
B_CELL_NAIVE_77
86.0
B_CELL_NAIVE_78
85.5
B_CELL_NAIVE_79
84.5
B_CELL_NAIVE_80
84.4
B_CELL_NAIVE_81
81.0
B_CELL_NAIVE_82
79.7
B_CELL_NAIVE_83
79.6
B_CELL_NAIVE_84
79.5
B_CELL_NAIVE_85
79.1
B_CELL_NAIVE_86
77.0
B_CELL_NAIVE_87
76.9
B_CELL_NAIVE_88
75.9
B_CELL_NAIVE_89
73.3
B_CELL_NAIVE_90
72.4
B_CELL_NAIVE_91
71.0
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The Human Protein Atlas project is funded
