A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.2
nTPM
Monaco:
132.3
nTPM
Schmiedel:
44.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.2
HPA sample
nTPM
Classical monocyte nTPM: 3.8
Samples: 6
Max nTPM: 6.0
Min nTPM: 2.5
P10809_1003
3.1
P10809_1020
2.5
P10809_1039
3.2
P10809_1058
6.0
P10809_1080
3.8
P10809_1107
4.4
Intermediate monocyte nTPM: 6.5
Samples: 6
Max nTPM: 10.1
Min nTPM: 3.7
P10809_1004
6.6
P10809_1023
10.1
P10809_1042
4.3
P10809_1061
4.9
P10809_1081
9.6
P10809_1108
3.7
Non-classical monocyte nTPM: 23.2
Samples: 5
Max nTPM: 42.4
Min nTPM: 14.3
P10809_1005
22.3
P10809_1053
19.6
P10809_1072
17.4
P10809_1082
42.4
P10809_1109
14.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
132.3
Monaco sample
nTPM
Classical monocyte nTPM: 15.6
Samples: 4
Max nTPM: 18.8
Min nTPM: 10.6
RHH5313_R3680
18.8
RHH5221_R3593
10.6
RHH5250_R3622
15.3
RHH5279_R3651
17.8
Intermediate monocyte nTPM: 55.2
Samples: 4
Max nTPM: 87.5
Min nTPM: 26.7
RHH5314_R3681
26.7
RHH5222_R3594
42.5
RHH5251_R3623
87.5
RHH5280_R3652
64.1
Non-classical monocyte nTPM: 132.3
Samples: 4
Max nTPM: 181.5
Min nTPM: 71.1
RHH5315_R3682
71.1
RHH5223_R3595
110.9
RHH5252_R3624
165.7
RHH5281_R3653
181.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.4
Schmiedel sample id
TPM
Classical monocyte TPM: 44.4
Samples: 91
Max TPM: 59.1
Min TPM: 30.1
MONOCYTES_1
59.1
MONOCYTES_2
56.8
MONOCYTES_3
54.5
MONOCYTES_4
53.9
MONOCYTES_5
53.7
MONOCYTES_6
52.7
MONOCYTES_7
52.1
MONOCYTES_8
52.0
MONOCYTES_9
51.6
MONOCYTES_10
51.4
MONOCYTES_11
51.1
MONOCYTES_12
51.0
MONOCYTES_13
50.8
MONOCYTES_14
49.7
MONOCYTES_15
49.7
MONOCYTES_16
49.7
MONOCYTES_17
49.5
MONOCYTES_18
49.1
MONOCYTES_19
49.0
MONOCYTES_20
48.9
MONOCYTES_21
48.6
MONOCYTES_22
48.6
MONOCYTES_23
48.4
MONOCYTES_24
48.4
MONOCYTES_25
47.9
MONOCYTES_26
47.8
MONOCYTES_27
47.8
MONOCYTES_28
47.7
MONOCYTES_29
47.3
MONOCYTES_30
47.3
MONOCYTES_31
46.9
MONOCYTES_32
46.9
MONOCYTES_33
46.9
MONOCYTES_34
46.8
MONOCYTES_35
46.8
MONOCYTES_36
46.7
MONOCYTES_37
46.1
MONOCYTES_38
45.6
MONOCYTES_39
45.6
MONOCYTES_40
45.5
MONOCYTES_41
45.3
MONOCYTES_42
45.2
MONOCYTES_43
45.2
MONOCYTES_44
44.9
MONOCYTES_45
44.5
MONOCYTES_46
44.4
MONOCYTES_47
44.4
MONOCYTES_48
44.2
MONOCYTES_49
44.2
MONOCYTES_50
44.1
MONOCYTES_51
44.0
MONOCYTES_52
43.5
MONOCYTES_53
43.0
MONOCYTES_54
42.9
MONOCYTES_55
42.7
MONOCYTES_56
42.6
MONOCYTES_57
42.4
MONOCYTES_58
42.3
MONOCYTES_59
42.3
MONOCYTES_60
41.8
MONOCYTES_61
41.5
MONOCYTES_62
41.5
MONOCYTES_63
41.4
MONOCYTES_64
41.2
MONOCYTES_65
41.2
MONOCYTES_66
41.0
MONOCYTES_67
40.9
MONOCYTES_68
40.4
MONOCYTES_69
40.2
MONOCYTES_70
40.2
MONOCYTES_71
39.8
MONOCYTES_72
39.6
MONOCYTES_73
39.1
MONOCYTES_74
39.0
MONOCYTES_75
39.0
MONOCYTES_76
39.0
MONOCYTES_77
39.0
MONOCYTES_78
38.5
MONOCYTES_79
38.3
MONOCYTES_80
37.4
MONOCYTES_81
37.3
MONOCYTES_82
37.1
MONOCYTES_83
37.0
MONOCYTES_84
36.3
MONOCYTES_85
35.9
MONOCYTES_86
35.7
MONOCYTES_87
35.6
MONOCYTES_88
34.5
MONOCYTES_89
34.3
MONOCYTES_90
33.2
MONOCYTES_91
30.1
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Non-classical monocyte TPM: 41.6
Samples: 90
Max TPM: 58.6
Min TPM: 29.9
M2_1
58.6
M2_2
54.5
M2_3
54.4
M2_4
53.2
M2_5
53.1
M2_6
52.0
M2_7
51.3
M2_8
50.4
M2_9
50.4
M2_10
49.0
M2_11
48.9
M2_12
48.3
M2_13
47.9
M2_14
47.8
M2_15
47.4
M2_16
47.2
M2_17
47.0
M2_18
46.9
M2_19
46.6
M2_20
46.3
M2_21
46.1
M2_22
46.1
M2_23
46.1
M2_24
46.1
M2_25
46.0
M2_26
45.7
M2_27
45.7
M2_28
45.6
M2_29
45.2
M2_30
44.8
M2_31
44.1
M2_32
43.4
M2_33
43.4
M2_34
43.2
M2_35
43.2
M2_36
43.1
M2_37
43.0
M2_38
42.9
M2_39
42.7
M2_40
42.1
M2_41
42.0
M2_42
41.3
M2_43
41.2
M2_44
41.1
M2_45
41.0
M2_46
40.7
M2_47
40.6
M2_48
40.3
M2_49
39.7
M2_50
39.5
M2_51
39.2
M2_52
39.0
M2_53
38.8
M2_54
38.7
M2_55
38.7
M2_56
38.6
M2_57
38.5
M2_58
38.5
M2_59
38.4
M2_60
38.1
M2_61
38.1
M2_62
38.0
M2_63
38.0
M2_64
38.0
M2_65
37.8
M2_66
37.8
M2_67
37.5
M2_68
37.5
M2_69
36.9
M2_70
36.8
M2_71
36.7
M2_72
36.7
M2_73
36.4
M2_74
36.3
M2_75
36.3
M2_76
36.0
M2_77
35.9
M2_78
35.8
M2_79
35.5
M2_80
34.9
M2_81
34.5
M2_82
34.2
M2_83
33.7
M2_84
33.1
M2_85
32.6
M2_86
32.4
M2_87
31.6
M2_88
31.1
M2_89
30.8
M2_90
29.9
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