A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.3
nTPM
Monaco:
157.7
nTPM
Schmiedel:
67.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.3
HPA sample
nTPM
Memory B-cell nTPM: 35.3
Samples: 6
Max nTPM: 57.1
Min nTPM: 19.2
P10809_1017
38.3
P10809_1025
57.1
P10809_1044
19.2
P10809_1063
34.4
P10809_1092
27.2
P10809_1105
35.5
Naive B-cell nTPM: 28.6
Samples: 6
Max nTPM: 50.0
Min nTPM: 19.5
P10809_1011
19.5
P10809_1029
26.5
P10809_1048
50.0
P10809_1067
22.0
P10809_1091
27.0
P10809_1104
26.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
157.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 131.7
Samples: 4
Max nTPM: 175.0
Min nTPM: 102.1
RHH5310_R3677
134.6
RHH5218_R3590
102.1
RHH5247_R3619
175.0
RHH5276_R3648
115.0
Naive B-cell nTPM: 121.8
Samples: 4
Max nTPM: 139.5
Min nTPM: 108.5
RHH5308_R3675
128.2
RHH5216_R3588
108.5
RHH5245_R3617
139.5
RHH5274_R3646
111.1
Non-switched memory B-cell nTPM: 117.7
Samples: 4
Max nTPM: 148.4
Min nTPM: 92.5
RHH5309_R3676
135.9
RHH5217_R3589
92.5
RHH5246_R3618
93.9
RHH5275_R3647
148.4
Plasmablast nTPM: 79.9
Samples: 4
Max nTPM: 101.1
Min nTPM: 58.7
RHH5312_R3679
101.1
RHH5220_R3592
58.7
RHH5249_R3621
80.4
RHH5278_R3650
79.3
Switched memory B-cell nTPM: 157.7
Samples: 4
Max nTPM: 169.6
Min nTPM: 135.0
RHH5311_R3678
157.0
RHH5219_R3591
135.0
RHH5248_R3620
169.6
RHH5277_R3649
169.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.1
Schmiedel sample id
TPM
Naive B-cell TPM: 67.1
Samples: 91
Max TPM: 111.9
Min TPM: 39.8
B_CELL_NAIVE_1
111.9
B_CELL_NAIVE_2
110.1
B_CELL_NAIVE_3
109.4
B_CELL_NAIVE_4
109.3
B_CELL_NAIVE_5
102.8
B_CELL_NAIVE_6
102.6
B_CELL_NAIVE_7
93.9
B_CELL_NAIVE_8
91.4
B_CELL_NAIVE_9
87.2
B_CELL_NAIVE_10
86.7
B_CELL_NAIVE_11
79.4
B_CELL_NAIVE_12
78.4
B_CELL_NAIVE_13
78.3
B_CELL_NAIVE_14
77.1
B_CELL_NAIVE_15
76.2
B_CELL_NAIVE_16
75.4
B_CELL_NAIVE_17
74.4
B_CELL_NAIVE_18
74.3
B_CELL_NAIVE_19
73.6
B_CELL_NAIVE_20
73.3
B_CELL_NAIVE_21
73.1
B_CELL_NAIVE_22
73.0
B_CELL_NAIVE_23
73.0
B_CELL_NAIVE_24
72.9
B_CELL_NAIVE_25
72.4
B_CELL_NAIVE_26
72.4
B_CELL_NAIVE_27
72.0
B_CELL_NAIVE_28
71.1
B_CELL_NAIVE_29
70.5
B_CELL_NAIVE_30
70.0
B_CELL_NAIVE_31
69.8
B_CELL_NAIVE_32
69.6
B_CELL_NAIVE_33
68.8
B_CELL_NAIVE_34
68.5
B_CELL_NAIVE_35
68.3
B_CELL_NAIVE_36
67.7
B_CELL_NAIVE_37
67.3
B_CELL_NAIVE_38
67.1
B_CELL_NAIVE_39
67.1
B_CELL_NAIVE_40
66.4
B_CELL_NAIVE_41
65.8
B_CELL_NAIVE_42
65.7
B_CELL_NAIVE_43
65.6
B_CELL_NAIVE_44
65.1
B_CELL_NAIVE_45
65.0
B_CELL_NAIVE_46
64.9
B_CELL_NAIVE_47
64.5
B_CELL_NAIVE_48
64.1
B_CELL_NAIVE_49
63.8
B_CELL_NAIVE_50
63.0
B_CELL_NAIVE_51
62.4
B_CELL_NAIVE_52
62.4
B_CELL_NAIVE_53
62.4
B_CELL_NAIVE_54
62.3
B_CELL_NAIVE_55
61.6
B_CELL_NAIVE_56
61.0
B_CELL_NAIVE_57
60.9
B_CELL_NAIVE_58
60.6
B_CELL_NAIVE_59
60.5
B_CELL_NAIVE_60
60.2
B_CELL_NAIVE_61
59.6
B_CELL_NAIVE_62
59.6
B_CELL_NAIVE_63
59.4
B_CELL_NAIVE_64
59.4
B_CELL_NAIVE_65
59.2
B_CELL_NAIVE_66
59.2
B_CELL_NAIVE_67
58.9
B_CELL_NAIVE_68
58.4
B_CELL_NAIVE_69
58.0
B_CELL_NAIVE_70
56.9
B_CELL_NAIVE_71
56.8
B_CELL_NAIVE_72
56.6
B_CELL_NAIVE_73
55.7
B_CELL_NAIVE_74
55.5
B_CELL_NAIVE_75
55.2
B_CELL_NAIVE_76
54.8
B_CELL_NAIVE_77
54.8
B_CELL_NAIVE_78
54.8
B_CELL_NAIVE_79
53.8
B_CELL_NAIVE_80
53.8
B_CELL_NAIVE_81
52.4
B_CELL_NAIVE_82
51.6
B_CELL_NAIVE_83
51.3
B_CELL_NAIVE_84
51.3
B_CELL_NAIVE_85
50.4
B_CELL_NAIVE_86
49.1
B_CELL_NAIVE_87
48.7
B_CELL_NAIVE_88
47.8
B_CELL_NAIVE_89
46.5
B_CELL_NAIVE_90
45.2
B_CELL_NAIVE_91
39.8
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The Human Protein Atlas project is funded
