A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
55.8
nTPM
Schmiedel:
19.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
Classical monocyte nTPM: 7.5
Samples: 6
Max nTPM: 10.9
Min nTPM: 5.3
P10809_1003
8.7
P10809_1020
10.9
P10809_1039
6.7
P10809_1058
6.4
P10809_1080
7.2
P10809_1107
5.3
Intermediate monocyte nTPM: 10.2
Samples: 6
Max nTPM: 15.4
Min nTPM: 6.0
P10809_1004
9.8
P10809_1023
15.4
P10809_1042
12.7
P10809_1061
8.4
P10809_1081
8.6
P10809_1108
6.0
Non-classical monocyte nTPM: 16.3
Samples: 5
Max nTPM: 39.2
Min nTPM: 7.7
P10809_1005
12.4
P10809_1053
14.0
P10809_1072
39.2
P10809_1082
8.2
P10809_1109
7.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.8
Monaco sample
nTPM
Classical monocyte nTPM: 34.6
Samples: 4
Max nTPM: 43.6
Min nTPM: 24.4
RHH5313_R3680
24.4
RHH5221_R3593
43.6
RHH5250_R3622
36.0
RHH5279_R3651
34.2
Intermediate monocyte nTPM: 49.7
Samples: 4
Max nTPM: 59.5
Min nTPM: 41.2
RHH5314_R3681
46.6
RHH5222_R3594
59.5
RHH5251_R3623
41.2
RHH5280_R3652
51.6
Non-classical monocyte nTPM: 55.8
Samples: 4
Max nTPM: 78.1
Min nTPM: 44.0
RHH5315_R3682
45.9
RHH5223_R3595
44.0
RHH5252_R3624
55.3
RHH5281_R3653
78.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.9
Schmiedel sample id
TPM
Classical monocyte TPM: 8.1
Samples: 91
Max TPM: 17.3
Min TPM: 4.1
MONOCYTES_1
17.3
MONOCYTES_2
13.8
MONOCYTES_3
12.7
MONOCYTES_4
12.3
MONOCYTES_5
12.3
MONOCYTES_6
11.8
MONOCYTES_7
11.8
MONOCYTES_8
11.6
MONOCYTES_9
11.5
MONOCYTES_10
11.4
MONOCYTES_11
11.3
MONOCYTES_12
11.1
MONOCYTES_13
10.9
MONOCYTES_14
10.9
MONOCYTES_15
10.8
MONOCYTES_16
10.8
MONOCYTES_17
10.8
MONOCYTES_18
10.7
MONOCYTES_19
10.6
MONOCYTES_20
10.0
MONOCYTES_21
10.0
MONOCYTES_22
9.7
MONOCYTES_23
9.6
MONOCYTES_24
9.5
MONOCYTES_25
9.5
MONOCYTES_26
9.2
MONOCYTES_27
9.0
MONOCYTES_28
8.9
MONOCYTES_29
8.9
MONOCYTES_30
8.7
MONOCYTES_31
8.7
MONOCYTES_32
8.4
MONOCYTES_33
8.3
MONOCYTES_34
8.3
MONOCYTES_35
8.1
MONOCYTES_36
8.1
MONOCYTES_37
8.0
MONOCYTES_38
7.9
MONOCYTES_39
7.8
MONOCYTES_40
7.6
MONOCYTES_41
7.6
MONOCYTES_42
7.6
MONOCYTES_43
7.5
MONOCYTES_44
7.4
MONOCYTES_45
7.4
MONOCYTES_46
7.3
MONOCYTES_47
7.3
MONOCYTES_48
7.3
MONOCYTES_49
7.2
MONOCYTES_50
7.1
MONOCYTES_51
7.1
MONOCYTES_52
7.1
MONOCYTES_53
7.1
MONOCYTES_54
7.0
MONOCYTES_55
7.0
MONOCYTES_56
7.0
MONOCYTES_57
7.0
MONOCYTES_58
6.9
MONOCYTES_59
6.9
MONOCYTES_60
6.9
MONOCYTES_61
6.9
MONOCYTES_62
6.9
MONOCYTES_63
6.9
MONOCYTES_64
6.9
MONOCYTES_65
6.8
MONOCYTES_66
6.8
MONOCYTES_67
6.8
MONOCYTES_68
6.8
MONOCYTES_69
6.4
MONOCYTES_70
6.4
MONOCYTES_71
6.4
MONOCYTES_72
6.2
MONOCYTES_73
6.0
MONOCYTES_74
6.0
MONOCYTES_75
6.0
MONOCYTES_76
6.0
MONOCYTES_77
5.9
MONOCYTES_78
5.9
MONOCYTES_79
5.8
MONOCYTES_80
5.8
MONOCYTES_81
5.8
MONOCYTES_82
5.8
MONOCYTES_83
5.6
MONOCYTES_84
5.4
MONOCYTES_85
5.2
MONOCYTES_86
5.2
MONOCYTES_87
5.1
MONOCYTES_88
5.0
MONOCYTES_89
4.8
MONOCYTES_90
4.4
MONOCYTES_91
4.1
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Non-classical monocyte TPM: 19.9
Samples: 90
Max TPM: 37.3
Min TPM: 10.4
M2_1
37.3
M2_2
37.0
M2_3
32.2
M2_4
30.9
M2_5
30.4
M2_6
30.2
M2_7
29.7
M2_8
29.1
M2_9
28.9
M2_10
28.7
M2_11
28.1
M2_12
27.4
M2_13
27.4
M2_14
26.5
M2_15
25.9
M2_16
25.7
M2_17
24.8
M2_18
24.5
M2_19
24.3
M2_20
24.2
M2_21
24.1
M2_22
23.3
M2_23
23.2
M2_24
22.3
M2_25
22.2
M2_26
22.2
M2_27
22.0
M2_28
21.7
M2_29
21.6
M2_30
21.2
M2_31
21.0
M2_32
20.6
M2_33
20.4
M2_34
20.2
M2_35
20.1
M2_36
20.1
M2_37
19.9
M2_38
19.9
M2_39
19.8
M2_40
19.7
M2_41
19.5
M2_42
19.5
M2_43
19.5
M2_44
19.3
M2_45
19.1
M2_46
19.0
M2_47
19.0
M2_48
18.9
M2_49
18.7
M2_50
18.5
M2_51
18.1
M2_52
18.0
M2_53
17.9
M2_54
17.8
M2_55
17.6
M2_56
17.5
M2_57
17.3
M2_58
17.0
M2_59
16.8
M2_60
16.7
M2_61
16.5
M2_62
16.4
M2_63
16.4
M2_64
16.4
M2_65
16.3
M2_66
16.0
M2_67
16.0
M2_68
15.3
M2_69
15.0
M2_70
15.0
M2_71
15.0
M2_72
14.9
M2_73
14.9
M2_74
14.5
M2_75
14.5
M2_76
14.5
M2_77
14.4
M2_78
14.3
M2_79
14.1
M2_80
14.0
M2_81
14.0
M2_82
13.9
M2_83
13.2
M2_84
12.5
M2_85
11.4
M2_86
11.2
M2_87
10.9
M2_88
10.6
M2_89
10.6
M2_90
10.4
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