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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPS8
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:383.0 nTPM
GTEx:1103.0 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Macaque:169.5 nTPM
Pig:374.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - Annotated protein expression
Pending normal tissue analysis

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

383.0
Sample id Sample description nTPM
Substantia nigra
nTPM: 383.0
2665 Male, age 74, both hemispheres 445.4
2699 Male, age 18, unknown 442.9
1851 Male, age 51, unknown 437.5
2241 Male, age 72, unknown 417.1
2409 Female, age 72, unknown 391.7
1916 Female, age 42, unknown 380.4
2590 Female, age 75, unknown 368.2
1889 Female, age 72, unknown 328.6
1941 Male, age 53, unknown 326.2
2583 Male, age 75, right hemisphere 292.2

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1103.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1103.0
Samples: 183

Max nTPM: 2526.4
Min nTPM: 430.4
Std nTPM: 379.4
Median nTPM: 1042.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2526.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2231.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2219.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2073.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1939.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1930.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1785.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1783.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1781.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1773.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1770.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1744.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1725.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1724.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1720.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1720.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1706.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1671.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1661.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1656.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1641.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1612.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1596.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1569.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1566.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1555.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1552.5
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1534.4
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1523.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1478.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1469.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1456.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1436.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1425.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1418.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1417.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1414.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1372.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1372.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1367.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1344.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1342.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1331.0
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1312.3
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1297.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1294.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1282.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1282.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1279.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1274.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1274.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1273.3
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1270.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1263.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1263.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1244.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1243.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1237.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1232.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1222.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1220.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1216.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1207.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1205.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1204.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1195.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1190.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1180.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1176.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1176.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1175.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1166.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1162.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1155.5
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1142.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1120.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1118.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1117.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1114.6
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1110.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1100.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1100.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1098.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1088.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1087.3
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 1083.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1074.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1064.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1063.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1060.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1053.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1042.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1041.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1040.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1037.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1031.4
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 1031.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1028.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1009.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 985.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 978.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 977.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 976.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 975.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 967.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 959.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 953.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 945.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 943.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 941.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 939.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 925.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 920.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 916.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 915.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 910.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 909.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 905.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 897.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 895.4
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 893.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 891.8
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 887.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 876.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 873.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 868.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 865.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 863.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 862.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 854.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 841.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 840.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 839.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 838.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 832.1
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 827.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 811.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 808.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 805.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 802.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 802.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 796.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 793.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 785.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 784.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 777.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 768.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 767.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 764.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 753.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 752.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 752.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 747.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 737.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 728.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 715.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 715.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 694.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 692.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 691.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 690.5
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 685.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 672.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 669.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 668.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 668.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 661.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 659.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 654.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 649.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 640.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 639.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 638.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 638.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 628.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 609.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 600.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 588.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 570.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 509.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 488.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 448.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 430.4
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 169.5
Samples: 1

Max nTPM: 169.5
Min nTPM: 169.5
Sample A 169.5

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

374.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 374.8
Samples: 3

Max nTPM: 455.6
Min nTPM: 294.8
Sample A Female 455.6
Sample B Female 373.9
Sample C Male 294.8

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