MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA Brain:111.1 nTPM
GTEx:27.8 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:25.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.8
2586 Male, age 75, left hemisphere 150.0
1827 Male, age 72, unknown 110.6
2411 Female, age 72, unknown 92.6
2828 Female, age 72, unknown 92.1
2219 Male, age 76, both hemispheres 88.6
2019 Male, age 18, unknown 81.0
1833 Male, age 53, unknown 78.8
1870 Female, age 42, unknown 77.7
2666 Male, age 74, left hemisphere 74.1
1830 Male, age 51, unknown 72.5
Dorsal raphe nucleus
nTPM: 83.3
2298 Female, age 72, unknown 97.8
2750 Male, age 76, both hemispheres 90.7
2047 Male, age 72, unknown 79.4
2016 Female, age 72, unknown 79.0
1828 Male, age 53, unknown 69.8
Inferior colliculus
nTPM: 70.2
2097 Female, age 72, unknown 76.3
2849 Male, age 72, unknown 72.2
1848 Female, age 42, unknown 68.1
1890 Male, age 53, unknown 64.2
Median raphe nucleus
nTPM: 89.0
2220 Male, age 76, midline 89.0
Periaquaductal grey, anterior
nTPM: 101.6
2502 Female, age 75, unknown 115.8
1795 Male, age 51, unknown 114.9
1947 Male, age 18, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 87.2
1840 Male, age 53, unknown 96.9
1831 Male, age 72, unknown 85.3
2850 Male, age 76, both hemispheres 84.2
2464 Female, age 72, unknown 82.5
Periaquaductal grey, lateral
nTPM: 90.5
2053 Male, age 18, unknown 97.9
2272 Male, age 74, both hemispheres 94.2
2140 Male, age 76, both hemispheres 79.4
Pretectal area
nTPM: 111.1
1816 Male, age 51, unknown 159.4
1944 Female, age 72, unknown 143.5
1815 Male, age 53, unknown 127.4
2007 Male, age 72, unknown 111.9
2667 Female, age 75, unknown 111.5
2407 Male, age 75, both hemispheres 106.8
1817 Female, age 42, unknown 106.7
2273 Male, age 74, both hemispheres 96.3
2224 Female, age 72, unknown 95.1
2825 Male, age 18, unknown 93.3
2316 Male, age 76, right hemisphere 70.1
Red nucleus
nTPM: 75.7
2584 Male, age 75, left hemisphere 90.1
2725 Female, age 75, unknown 89.1
2785 Male, age 18, unknown 87.1
2588 Male, age 74, left hemisphere 85.0
1904 Male, age 53, unknown 81.1
2503 Female, age 72, unknown 74.4
2227 Male, age 72, unknown 73.6
1865 Male, age 51, unknown 67.4
1821 Female, age 72, unknown 66.5
1954 Female, age 42, unknown 65.0
2769 Male, age 72, unknown 65.0
2823 Male, age 76, right hemisphere 63.9
Substantia nigra
nTPM: 100.4
1916 Female, age 42, unknown 116.1
1851 Male, age 51, unknown 113.1
2409 Female, age 72, unknown 99.7
1941 Male, age 53, unknown 99.4
1889 Female, age 72, unknown 99.3
2699 Male, age 18, unknown 99.0
2241 Male, age 72, unknown 98.4
2665 Male, age 74, both hemispheres 96.0
2583 Male, age 75, right hemisphere 92.6
2590 Female, age 75, unknown 90.9
Superior colliculus
nTPM: 104.9
2664 Male, age 75, both hemispheres 147.8
2261 Male, age 18, unknown 141.4
2087 Female, age 72, unknown 124.7
1796 Male, age 53, unknown 115.2
1913 Female, age 42, unknown 106.7
1995 Male, age 72, unknown 99.1
2587 Male, age 74, left hemisphere 82.1
2668 Female, age 75, unknown 79.3
1839 Male, age 51, unknown 79.1
1895 Male, age 76, right hemisphere 73.4
Ventral tegmental area
nTPM: 95.0
2410 Female, age 72, unknown 107.9
2218 Male, age 76, both hemispheres 99.0
1915 Female, age 42, unknown 94.5
2223 Female, age 72, unknown 92.8
2021 Male, age 53, unknown 88.0
1942 Male, age 51, unknown 87.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.8
Samples: 183

Max nTPM: 53.8
Min nTPM: 11.3
Std nTPM: 7.6
Median nTPM: 27.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 53.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 51.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 45.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 44.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 43.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 42.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 41.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 40.0
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 39.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 39.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 21.9
Min nTPM: 12.7
Sample A Female 20.0
Sample B Female 13.0
Sample C Male 21.9
Sample D Male 12.7
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.5
Sample A Female 16.9
Sample B Female 14.5
Sample C Male 15.7
Sample D Male 16.9
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 22.3
Min nTPM: 15.9
Sample B Female 16.5
Sample C Male 22.3
Sample D Male 15.9
Superior colliculi
nTPM: 14.6
Samples: 4

Max nTPM: 17.5
Min nTPM: 11.0
Sample A Female 17.5
Sample B Female 15.5
Sample C Male 11.0
Sample D Male 14.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 23.2
Sample A Male 23.7
Sample B Male 23.2
Sample C Female 26.6
Sample D Female 26.4

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