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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
54.4
nTPM
HPA Brain:
55.3
nTPM
GTEx:
54.4
nTPM
FANTOM5:
57.2
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
55.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 38.7
1870
Female, age 42, unknown
50.4
2828
Female, age 72, unknown
45.0
2411
Female, age 72, unknown
44.0
1833
Male, age 53, unknown
41.8
1827
Male, age 72, unknown
40.4
2019
Male, age 18, unknown
36.0
1830
Male, age 51, unknown
35.4
2586
Male, age 75, left hemisphere
32.9
2219
Male, age 76, both hemispheres
32.4
2666
Male, age 74, left hemisphere
28.9
Dorsal raphe nucleus nTPM: 55.3
2016
Female, age 72, unknown
68.1
2298
Female, age 72, unknown
67.1
1828
Male, age 53, unknown
49.9
2047
Male, age 72, unknown
47.1
2750
Male, age 76, both hemispheres
44.3
Inferior colliculus nTPM: 43.2
2097
Female, age 72, unknown
51.4
1848
Female, age 42, unknown
42.8
2849
Male, age 72, unknown
39.5
1890
Male, age 53, unknown
39.0
Median raphe nucleus nTPM: 41.3
2220
Male, age 76, midline
41.3
Periaquaductal grey, anterior nTPM: 41.2
1795
Male, age 51, unknown
44.9
1947
Male, age 18, unknown
42.5
2502
Female, age 75, unknown
36.2
Periaquaductal grey, dorsal nTPM: 51.1
2850
Male, age 76, both hemispheres
57.4
1840
Male, age 53, unknown
56.6
2464
Female, age 72, unknown
45.7
1831
Male, age 72, unknown
44.7
Periaquaductal grey, lateral nTPM: 52.6
2140
Male, age 76, both hemispheres
54.2
2053
Male, age 18, unknown
52.4
2272
Male, age 74, both hemispheres
51.2
Pretectal area nTPM: 43.8
2224
Female, age 72, unknown
60.7
2273
Male, age 74, both hemispheres
60.1
2316
Male, age 76, right hemisphere
46.6
2825
Male, age 18, unknown
46.2
2667
Female, age 75, unknown
45.3
1815
Male, age 53, unknown
42.8
1816
Male, age 51, unknown
40.5
1817
Female, age 42, unknown
39.8
1944
Female, age 72, unknown
39.3
2007
Male, age 72, unknown
31.2
2407
Male, age 75, both hemispheres
29.1
Red nucleus nTPM: 39.5
1821
Female, age 72, unknown
47.1
1954
Female, age 42, unknown
45.4
2503
Female, age 72, unknown
44.3
2769
Male, age 72, unknown
44.2
1904
Male, age 53, unknown
43.9
2823
Male, age 76, right hemisphere
42.7
2227
Male, age 72, unknown
42.2
2725
Female, age 75, unknown
41.4
1865
Male, age 51, unknown
40.4
2785
Male, age 18, unknown
32.1
2588
Male, age 74, left hemisphere
27.4
2584
Male, age 75, left hemisphere
23.6
Substantia nigra nTPM: 43.7
2241
Male, age 72, unknown
52.4
2699
Male, age 18, unknown
50.9
1851
Male, age 51, unknown
48.5
2409
Female, age 72, unknown
46.5
1916
Female, age 42, unknown
46.4
2590
Female, age 75, unknown
45.4
1889
Female, age 72, unknown
40.7
2665
Male, age 74, both hemispheres
35.9
2583
Male, age 75, right hemisphere
35.4
1941
Male, age 53, unknown
34.7
Superior colliculus nTPM: 41.6
1995
Male, age 72, unknown
50.8
1913
Female, age 42, unknown
46.8
2587
Male, age 74, left hemisphere
44.3
2087
Female, age 72, unknown
41.9
1796
Male, age 53, unknown
41.0
2261
Male, age 18, unknown
40.3
1895
Male, age 76, right hemisphere
40.1
2668
Female, age 75, unknown
39.4
1839
Male, age 51, unknown
39.0
2664
Male, age 75, both hemispheres
32.0
Ventral tegmental area nTPM: 45.1
2021
Male, age 53, unknown
49.0
1915
Female, age 42, unknown
48.8
2410
Female, age 72, unknown
46.7
2223
Female, age 72, unknown
42.9
1942
Male, age 51, unknown
42.4
2218
Male, age 76, both hemispheres
40.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
54.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 54.4
Samples: 139
Max nTPM: 135.2
Min nTPM: 20.1
Std nTPM: 19.9
Median nTPM: 51.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
135.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
129.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
121.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
104.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
103.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
96.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
92.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
89.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
88.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
87.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
82.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
82.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
82.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
79.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
79.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
76.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
72.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
71.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
71.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
70.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
70.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
70.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
69.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
69.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
69.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
69.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
68.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
66.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
66.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
66.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
66.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
66.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
64.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
64.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
64.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
63.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
62.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
61.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
60.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
60.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
59.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
59.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
59.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
59.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
59.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
58.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
58.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
57.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
56.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
56.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
56.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
55.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
55.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
55.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
55.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
55.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
54.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
54.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
53.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
53.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
53.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
53.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
52.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
52.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
51.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
51.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
51.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
51.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
51.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
51.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
50.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
50.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
49.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
49.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
49.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
49.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
49.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
49.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
48.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
48.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
48.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
48.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
47.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
47.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
46.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
46.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
46.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
46.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
45.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
45.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
45.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
45.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
44.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
44.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
44.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
44.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
44.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
43.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
43.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
43.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
43.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
43.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
43.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
42.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
42.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
41.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
41.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
41.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
40.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
40.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
39.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
38.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
38.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
38.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
38.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
37.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
37.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
37.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
36.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
36.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
36.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
35.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
35.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
34.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
34.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
33.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
31.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
30.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
30.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
29.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
29.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
28.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
27.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
27.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
26.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
25.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
23.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
22.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
20.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.