MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA Brain:71.1 nTPM
GTEx:41.8 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:53.0 nTPM
Mouse:87.7 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.2
1870 Female, age 42, unknown 60.9
2411 Female, age 72, unknown 59.8
1833 Male, age 53, unknown 56.0
1830 Male, age 51, unknown 51.2
2019 Male, age 18, unknown 50.5
2219 Male, age 76, both hemispheres 50.3
2828 Female, age 72, unknown 50.0
1827 Male, age 72, unknown 47.8
2666 Male, age 74, left hemisphere 33.5
2586 Male, age 75, left hemisphere 32.1
Dorsal raphe nucleus
nTPM: 63.1
2298 Female, age 72, unknown 76.5
2750 Male, age 76, both hemispheres 62.9
2016 Female, age 72, unknown 60.5
1828 Male, age 53, unknown 60.3
2047 Male, age 72, unknown 55.1
Inferior colliculus
nTPM: 57.1
2097 Female, age 72, unknown 64.6
1848 Female, age 42, unknown 56.8
1890 Male, age 53, unknown 55.1
2849 Male, age 72, unknown 52.0
Median raphe nucleus
nTPM: 71.1
2220 Male, age 76, midline 71.1
Periaquaductal grey, anterior
nTPM: 52.6
1795 Male, age 51, unknown 54.3
2502 Female, age 75, unknown 52.1
1947 Male, age 18, unknown 51.6
Periaquaductal grey, dorsal
nTPM: 54.5
2850 Male, age 76, both hemispheres 62.5
1840 Male, age 53, unknown 56.7
1831 Male, age 72, unknown 50.7
2464 Female, age 72, unknown 48.2
Periaquaductal grey, lateral
nTPM: 63.0
2272 Male, age 74, both hemispheres 74.4
2140 Male, age 76, both hemispheres 63.3
2053 Male, age 18, unknown 51.4
Pretectal area
nTPM: 54.6
2273 Male, age 74, both hemispheres 81.2
2224 Female, age 72, unknown 65.5
2667 Female, age 75, unknown 58.4
2825 Male, age 18, unknown 53.0
2316 Male, age 76, right hemisphere 52.6
1817 Female, age 42, unknown 51.7
2407 Male, age 75, both hemispheres 50.0
1815 Male, age 53, unknown 48.0
1816 Male, age 51, unknown 47.5
2007 Male, age 72, unknown 47.0
1944 Female, age 72, unknown 45.9
Red nucleus
nTPM: 53.4
1821 Female, age 72, unknown 66.3
1954 Female, age 42, unknown 59.8
2227 Male, age 72, unknown 59.1
1904 Male, age 53, unknown 57.9
2725 Female, age 75, unknown 57.2
1865 Male, age 51, unknown 55.4
2823 Male, age 76, right hemisphere 53.7
2769 Male, age 72, unknown 53.1
2785 Male, age 18, unknown 53.0
2503 Female, age 72, unknown 49.8
2588 Male, age 74, left hemisphere 37.8
2584 Male, age 75, left hemisphere 37.5
Substantia nigra
nTPM: 51.2
2241 Male, age 72, unknown 63.5
1916 Female, age 42, unknown 61.5
1851 Male, age 51, unknown 56.2
2699 Male, age 18, unknown 52.9
1889 Female, age 72, unknown 52.2
2409 Female, age 72, unknown 50.1
1941 Male, age 53, unknown 49.2
2590 Female, age 75, unknown 47.0
2665 Male, age 74, both hemispheres 40.0
2583 Male, age 75, right hemisphere 39.6
Superior colliculus
nTPM: 49.6
2587 Male, age 74, left hemisphere 57.6
2261 Male, age 18, unknown 56.4
1913 Female, age 42, unknown 53.6
1995 Male, age 72, unknown 53.4
1895 Male, age 76, right hemisphere 50.6
1796 Male, age 53, unknown 49.2
2087 Female, age 72, unknown 45.8
2668 Female, age 75, unknown 45.6
1839 Male, age 51, unknown 45.4
2664 Male, age 75, both hemispheres 38.3
Ventral tegmental area
nTPM: 59.7
2218 Male, age 76, both hemispheres 67.1
2223 Female, age 72, unknown 60.5
1915 Female, age 42, unknown 59.6
2410 Female, age 72, unknown 58.2
1942 Male, age 51, unknown 57.5
2021 Male, age 53, unknown 55.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.8
Samples: 183

Max nTPM: 87.5
Min nTPM: 23.8
Std nTPM: 10.2
Median nTPM: 40.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 87.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 82.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 70.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 70.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 64.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 62.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 62.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 61.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 61.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 60.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.0
FF:10158-103A5 76 years, female 94.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.0
Samples: 4

Max nTPM: 54.6
Min nTPM: 50.1
Sample A Female 50.1
Sample B Female 53.4
Sample C Male 53.7
Sample D Male 54.6
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 53.8
Min nTPM: 51.8
Sample A Female 52.9
Sample B Female 53.7
Sample C Male 51.8
Sample D Male 53.8
Periaqueductal gray
nTPM: 52.6
Samples: 3

Max nTPM: 53.5
Min nTPM: 51.8
Sample B Female 53.5
Sample C Male 51.8
Sample D Male 52.4
Superior colliculi
nTPM: 51.6
Samples: 4

Max nTPM: 57.5
Min nTPM: 47.8
Sample A Female 47.8
Sample B Female 49.8
Sample C Male 57.5
Sample D Male 51.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.7
Samples: 4

Max nTPM: 90.0
Min nTPM: 85.9
Sample A Male 85.9
Sample B Male 87.8
Sample C Female 87.1
Sample D Female 90.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
386233 Antisense, RP_040804_01_C05, Mouse strain C57BL/6J (56 days, male) 1.6

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