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  • MGST3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:239.5 nTPM
HPA Brain:171.5 nTPM
GTEx:239.5 nTPM
FANTOM5:193.5 Scaled Tags Per Million
Pig:288.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 161.7
1981 Female, age 72, midline 199.5
2048 Male, age 55, midline 167.8
2565 Male, age 75, midline 150.6
2816 Male, age 47, midline 150.3
2194 Female, age 79, both hemispheres 140.2
Cervical spinal cord, dorsal horn
nTPM: 171.5
2296 Male, age 66, both hemispheres 228.5
2173 Female, age 72, unknown 222.4
2069 Male, age 47, both hemispheres 172.7
1877 Male, age 55, unknown 142.2
2297 Male, age 75, both hemispheres 141.5
2721 Male, age 90, both hemispheres 121.8
Cervical spinal cord, ventral horn
nTPM: 161.4
2098 Female, age 72, unknown 189.5
2480 Male, age 75, both hemispheres 183.2
2068 Male, age 55, unknown 163.1
2809 Male, age 90, both hemispheres 151.7
2295 Male, age 66, both hemispheres 148.9
2820 Female, age 79, both hemispheres 132.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 239.5
Samples: 204

Max nTPM: 477.6
Min nTPM: 90.7
Std nTPM: 66.5
Median nTPM: 234.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 477.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 427.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 395.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 381.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 376.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 373.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 371.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 365.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 363.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 363.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 361.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 357.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 355.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 350.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 350.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 349.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 348.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 336.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 334.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 333.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 333.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 332.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 332.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 324.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 323.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 321.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 320.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 318.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 314.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 313.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 307.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 306.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 305.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 304.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 302.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 301.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 300.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 300.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 300.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 297.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 296.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 293.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 290.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 290.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 289.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 286.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 285.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 278.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 277.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 277.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 276.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 275.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 274.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 274.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 271.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 271.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 271.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 270.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 270.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 269.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 268.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 265.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 265.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 264.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 262.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 262.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 260.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 259.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 258.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 258.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 257.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 256.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 256.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 255.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 255.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 255.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 254.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 254.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 254.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 253.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 252.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 248.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 248.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 247.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 246.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 245.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 245.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 244.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 244.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 244.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 244.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 242.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 242.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 241.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 240.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 237.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 237.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 236.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 235.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 235.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 235.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 234.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 234.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 233.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 232.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 232.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 231.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 231.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 230.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 230.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 229.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 229.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 228.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 226.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 226.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 226.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 226.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 223.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 223.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 221.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 220.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 219.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 219.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 218.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 218.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 217.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 216.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 215.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 215.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 214.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 214.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 211.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 211.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 209.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 209.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 208.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 207.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 206.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 205.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 204.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 203.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 202.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 202.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 201.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 201.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 200.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 199.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 197.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 197.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 196.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 196.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 195.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 195.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 195.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 194.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 194.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 189.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 187.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 187.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 186.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 185.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 184.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 182.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 181.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 179.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 177.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 175.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 175.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 174.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 174.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 174.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 173.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 173.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 171.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 171.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 169.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 168.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 166.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 164.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 162.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 162.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 162.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 159.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 154.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 153.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 151.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 150.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 150.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 149.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 148.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 148.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 147.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 147.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 147.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 143.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 134.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 131.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 130.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 118.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 115.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 110.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 106.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 106.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 90.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

193.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 193.5
FF:10181-103D1 60 years, female 243.8
FF:10159-103A6 76 years, female 143.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 187.6
Samples: 4

Max nTPM: 217.5
Min nTPM: 173.2
Sample A Female 217.5
Sample B Female 173.2
Sample C Male 177.4
Sample D Male 182.2
Ventral spinal cord
nTPM: 288.3
Samples: 4

Max nTPM: 340.7
Min nTPM: 227.7
Sample A Female 299.7
Sample B Female 340.7
Sample C Male 285.0
Sample D Male 227.7

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