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  • RGS5
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

63.344
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:70.4 nTPM
HPA Brain:96.9 nTPM
GTEx:70.4 nTPM
FANTOM5:87.2 Scaled Tags Per Million
Pig:70.9 nTPM
Mouse:55.8 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA001821
Amygdala mean intensity 63.344
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 54.378
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 53.671
Cortical amygdala 51.342
Central amygdala 63.344
Medial amygdaloid nucleus 40.342

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.9
Sample id Sample description nTPM
Amygdala
nTPM: 75.7
2695 Female, age 67, right hemisphere 151.9
2814 Male, age 76, right hemisphere 83.3
2517 Female, age 94, left hemisphere 68.4
2514 Male, age 75, right hemisphere 44.3
1987 Female, age 91, left hemisphere 30.5
Basal amygdala
nTPM: 65.0
2827 Female, age 67, right hemisphere 122.7
1955 Male, age 76, both hemispheres 73.7
2110 Male, age 80, left hemisphere 53.9
2609 Male, age 75, right hemisphere 50.0
2243 Female, age 91, right hemisphere 46.2
2685 Female, age 94, left hemisphere 43.3
Central amygdala
nTPM: 69.2
2826 Female, age 94, left hemisphere 102.1
1905 Male, age 76, both hemispheres 86.5
2515 Male, age 75, right hemisphere 61.0
2239 Male, age 80, left hemisphere 50.5
2701 Female, age 91, right hemisphere 46.0
Corticomedial amygdala
nTPM: 58.2
2535 Female, age 67, right hemisphere 82.5
2428 Male, age 75, right hemisphere 79.4
2240 Male, age 76, both hemispheres 73.6
2429 Female, age 94, left hemisphere 45.2
2829 Male, age 80, left hemisphere 42.0
2242 Female, age 91, right hemisphere 26.4
Lateral amygdala
nTPM: 96.9
2830 Female, age 67, right hemisphere 197.1
2516 Male, age 75, right hemisphere 96.8
2534 Female, age 94, left hemisphere 87.7
1883 Male, age 76, both hemispheres 79.9
2255 Female, age 91, right hemisphere 63.3
2256 Male, age 80, left hemisphere 56.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 70.4
Samples: 181

Max nTPM: 273.8
Min nTPM: 12.6
Std nTPM: 46.2
Median nTPM: 58.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 273.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 251.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 243.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 226.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 216.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 207.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 181.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 172.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 169.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 160.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 159.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 157.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 153.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 145.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 141.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 140.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 136.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 127.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 119.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 113.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 112.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 108.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 106.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 104.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 104.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 103.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 102.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 100.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 98.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 98.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 97.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 96.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 95.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 94.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 94.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 93.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 92.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 89.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 88.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 83.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 83.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 82.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 81.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 79.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 78.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 77.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 77.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 77.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 76.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 76.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 75.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 74.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 73.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 73.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 72.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 71.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 70.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 70.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 69.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 69.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 68.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 67.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 67.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 67.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 67.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 66.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 65.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 64.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 63.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 63.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 63.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 63.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 62.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 61.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 61.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 60.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 59.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 59.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 58.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 57.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 56.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 56.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 56.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 55.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 54.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 54.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 54.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 54.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 54.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 53.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 53.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 52.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 52.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 52.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 51.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 50.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 50.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 50.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 48.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 47.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 47.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 46.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 46.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 46.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 44.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 44.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 43.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 43.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 43.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 43.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 43.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 43.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 42.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 42.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 42.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 41.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 41.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 40.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 40.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 39.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 38.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 38.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 38.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 38.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 38.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 37.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 37.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 36.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 36.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 36.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 36.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 35.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 34.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 34.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 34.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 33.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 33.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 33.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 32.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 32.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 32.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 30.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 30.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 30.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 29.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 29.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 28.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 28.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 27.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 25.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 23.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 23.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 23.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 23.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 22.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 22.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 22.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 21.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 20.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 19.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 17.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 17.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 13.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 12.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 87.2
FF:10151-102I7 76 years, female 87.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.9
Pig sample Sample description nTPM
Amygdala
nTPM: 70.9
Samples: 4

Max nTPM: 83.2
Min nTPM: 54.8
Sample A Female 67.0
Sample B Female 78.6
Sample C Male 83.2
Sample D Male 54.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 55.8
Samples: 4

Max nTPM: 66.3
Min nTPM: 48.6
Sample A Male 48.6
Sample B Male 52.2
Sample C Female 66.3
Sample D Female 56.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.3
74357571 Antisense, RP_050921_01_D09, Mouse strain C57BL/6J (56 days, male) 1.3
71724672 Antisense, RP_050921_01_D09, Mouse strain C57BL/6J (56 days, male) 1.1

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