RFX5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • RFX5
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:53.6 nTPM
Monaco:229.4 nTPM
Schmiedel:196.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

53.6
HPA sample nTPM
Memory B-cell
nTPM: 48.1
Samples: 6

Max nTPM: 64.8
Min nTPM: 13.0
P10809_1017 50.3
P10809_1025 64.8
P10809_1044 13.0
P10809_1063 53.9
P10809_1092 61.8
P10809_1105 44.6
Naive B-cell
nTPM: 53.6
Samples: 6

Max nTPM: 86.8
Min nTPM: 41.0
P10809_1011 42.8
P10809_1029 44.3
P10809_1048 86.8
P10809_1067 41.0
P10809_1091 46.3
P10809_1104 60.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

229.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 197.9
Samples: 4

Max nTPM: 221.7
Min nTPM: 169.2
RHH5310_R3677 221.7
RHH5218_R3590 190.8
RHH5247_R3619 169.2
RHH5276_R3648 209.9
Naive B-cell
nTPM: 229.4
Samples: 4

Max nTPM: 244.8
Min nTPM: 211.6
RHH5308_R3675 211.6
RHH5216_R3588 232.2
RHH5245_R3617 244.8
RHH5274_R3646 229.0
Non-switched memory B-cell
nTPM: 187.7
Samples: 4

Max nTPM: 209.9
Min nTPM: 149.0
RHH5309_R3676 201.6
RHH5217_R3589 149.0
RHH5246_R3618 209.9
RHH5275_R3647 190.4
Plasmablast
nTPM: 112.0
Samples: 4

Max nTPM: 128.1
Min nTPM: 75.8
RHH5312_R3679 128.1
RHH5220_R3592 126.5
RHH5249_R3621 75.8
RHH5278_R3650 117.7
Switched memory B-cell
nTPM: 212.6
Samples: 4

Max nTPM: 240.9
Min nTPM: 176.3
RHH5311_R3678 213.7
RHH5219_R3591 176.3
RHH5248_R3620 240.9
RHH5277_R3649 219.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

196.4
Schmiedel sample id TPM
Naive B-cell
TPM: 196.4
Samples: 91

Max TPM: 254.6
Min TPM: 126.9
B_CELL_NAIVE_1 254.6
B_CELL_NAIVE_2 241.1
B_CELL_NAIVE_3 240.3
B_CELL_NAIVE_4 238.7
B_CELL_NAIVE_5 235.5
B_CELL_NAIVE_6 227.6
B_CELL_NAIVE_7 226.7
B_CELL_NAIVE_8 225.1
B_CELL_NAIVE_9 224.0
B_CELL_NAIVE_10 222.9
B_CELL_NAIVE_11 222.8
B_CELL_NAIVE_12 219.6
B_CELL_NAIVE_13 219.5
B_CELL_NAIVE_14 219.1
B_CELL_NAIVE_15 217.4
B_CELL_NAIVE_16 215.8
B_CELL_NAIVE_17 215.6
B_CELL_NAIVE_18 215.3
B_CELL_NAIVE_19 214.7
B_CELL_NAIVE_20 213.0
B_CELL_NAIVE_21 212.1
B_CELL_NAIVE_22 210.0
B_CELL_NAIVE_23 209.5
B_CELL_NAIVE_24 209.1
B_CELL_NAIVE_25 209.1
B_CELL_NAIVE_26 207.7
B_CELL_NAIVE_27 206.5
B_CELL_NAIVE_28 205.1
B_CELL_NAIVE_29 205.1
B_CELL_NAIVE_30 204.3
B_CELL_NAIVE_31 204.2
B_CELL_NAIVE_32 204.0
B_CELL_NAIVE_33 203.3
B_CELL_NAIVE_34 202.6
B_CELL_NAIVE_35 202.3
B_CELL_NAIVE_36 201.3
B_CELL_NAIVE_37 201.1
B_CELL_NAIVE_38 200.4
B_CELL_NAIVE_39 200.2
B_CELL_NAIVE_40 199.9
B_CELL_NAIVE_41 198.2
B_CELL_NAIVE_42 197.8
B_CELL_NAIVE_43 197.1
B_CELL_NAIVE_44 197.0
B_CELL_NAIVE_45 196.5
B_CELL_NAIVE_46 196.4
B_CELL_NAIVE_47 195.9
B_CELL_NAIVE_48 195.5
B_CELL_NAIVE_49 194.7
B_CELL_NAIVE_50 194.7
B_CELL_NAIVE_51 194.4
B_CELL_NAIVE_52 192.5
B_CELL_NAIVE_53 191.6
B_CELL_NAIVE_54 191.5
B_CELL_NAIVE_55 191.3
B_CELL_NAIVE_56 191.1
B_CELL_NAIVE_57 190.7
B_CELL_NAIVE_58 187.3
B_CELL_NAIVE_59 187.1
B_CELL_NAIVE_60 187.0
B_CELL_NAIVE_61 186.9
B_CELL_NAIVE_62 186.9
B_CELL_NAIVE_63 186.2
B_CELL_NAIVE_64 186.2
B_CELL_NAIVE_65 186.0
B_CELL_NAIVE_66 185.1
B_CELL_NAIVE_67 184.9
B_CELL_NAIVE_68 184.1
B_CELL_NAIVE_69 183.4
B_CELL_NAIVE_70 183.0
B_CELL_NAIVE_71 182.1
B_CELL_NAIVE_72 180.3
B_CELL_NAIVE_73 177.4
B_CELL_NAIVE_74 177.0
B_CELL_NAIVE_75 176.8
B_CELL_NAIVE_76 176.3
B_CELL_NAIVE_77 176.3
B_CELL_NAIVE_78 176.0
B_CELL_NAIVE_79 175.5
B_CELL_NAIVE_80 174.5
B_CELL_NAIVE_81 174.2
B_CELL_NAIVE_82 171.1
B_CELL_NAIVE_83 170.5
B_CELL_NAIVE_84 169.3
B_CELL_NAIVE_85 164.4
B_CELL_NAIVE_86 163.7
B_CELL_NAIVE_87 160.8
B_CELL_NAIVE_88 157.2
B_CELL_NAIVE_89 155.3
B_CELL_NAIVE_90 154.4
B_CELL_NAIVE_91 126.9
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.