A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.6
nTPM
Monaco:
229.4
nTPM
Schmiedel:
196.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.6
HPA sample
nTPM
Memory B-cell nTPM: 48.1
Samples: 6
Max nTPM: 64.8
Min nTPM: 13.0
P10809_1017
50.3
P10809_1025
64.8
P10809_1044
13.0
P10809_1063
53.9
P10809_1092
61.8
P10809_1105
44.6
Naive B-cell nTPM: 53.6
Samples: 6
Max nTPM: 86.8
Min nTPM: 41.0
P10809_1011
42.8
P10809_1029
44.3
P10809_1048
86.8
P10809_1067
41.0
P10809_1091
46.3
P10809_1104
60.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
229.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 197.9
Samples: 4
Max nTPM: 221.7
Min nTPM: 169.2
RHH5310_R3677
221.7
RHH5218_R3590
190.8
RHH5247_R3619
169.2
RHH5276_R3648
209.9
Naive B-cell nTPM: 229.4
Samples: 4
Max nTPM: 244.8
Min nTPM: 211.6
RHH5308_R3675
211.6
RHH5216_R3588
232.2
RHH5245_R3617
244.8
RHH5274_R3646
229.0
Non-switched memory B-cell nTPM: 187.7
Samples: 4
Max nTPM: 209.9
Min nTPM: 149.0
RHH5309_R3676
201.6
RHH5217_R3589
149.0
RHH5246_R3618
209.9
RHH5275_R3647
190.4
Plasmablast nTPM: 112.0
Samples: 4
Max nTPM: 128.1
Min nTPM: 75.8
RHH5312_R3679
128.1
RHH5220_R3592
126.5
RHH5249_R3621
75.8
RHH5278_R3650
117.7
Switched memory B-cell nTPM: 212.6
Samples: 4
Max nTPM: 240.9
Min nTPM: 176.3
RHH5311_R3678
213.7
RHH5219_R3591
176.3
RHH5248_R3620
240.9
RHH5277_R3649
219.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
196.4
Schmiedel sample id
TPM
Naive B-cell TPM: 196.4
Samples: 91
Max TPM: 254.6
Min TPM: 126.9
B_CELL_NAIVE_1
254.6
B_CELL_NAIVE_2
241.1
B_CELL_NAIVE_3
240.3
B_CELL_NAIVE_4
238.7
B_CELL_NAIVE_5
235.5
B_CELL_NAIVE_6
227.6
B_CELL_NAIVE_7
226.7
B_CELL_NAIVE_8
225.1
B_CELL_NAIVE_9
224.0
B_CELL_NAIVE_10
222.9
B_CELL_NAIVE_11
222.8
B_CELL_NAIVE_12
219.6
B_CELL_NAIVE_13
219.5
B_CELL_NAIVE_14
219.1
B_CELL_NAIVE_15
217.4
B_CELL_NAIVE_16
215.8
B_CELL_NAIVE_17
215.6
B_CELL_NAIVE_18
215.3
B_CELL_NAIVE_19
214.7
B_CELL_NAIVE_20
213.0
B_CELL_NAIVE_21
212.1
B_CELL_NAIVE_22
210.0
B_CELL_NAIVE_23
209.5
B_CELL_NAIVE_24
209.1
B_CELL_NAIVE_25
209.1
B_CELL_NAIVE_26
207.7
B_CELL_NAIVE_27
206.5
B_CELL_NAIVE_28
205.1
B_CELL_NAIVE_29
205.1
B_CELL_NAIVE_30
204.3
B_CELL_NAIVE_31
204.2
B_CELL_NAIVE_32
204.0
B_CELL_NAIVE_33
203.3
B_CELL_NAIVE_34
202.6
B_CELL_NAIVE_35
202.3
B_CELL_NAIVE_36
201.3
B_CELL_NAIVE_37
201.1
B_CELL_NAIVE_38
200.4
B_CELL_NAIVE_39
200.2
B_CELL_NAIVE_40
199.9
B_CELL_NAIVE_41
198.2
B_CELL_NAIVE_42
197.8
B_CELL_NAIVE_43
197.1
B_CELL_NAIVE_44
197.0
B_CELL_NAIVE_45
196.5
B_CELL_NAIVE_46
196.4
B_CELL_NAIVE_47
195.9
B_CELL_NAIVE_48
195.5
B_CELL_NAIVE_49
194.7
B_CELL_NAIVE_50
194.7
B_CELL_NAIVE_51
194.4
B_CELL_NAIVE_52
192.5
B_CELL_NAIVE_53
191.6
B_CELL_NAIVE_54
191.5
B_CELL_NAIVE_55
191.3
B_CELL_NAIVE_56
191.1
B_CELL_NAIVE_57
190.7
B_CELL_NAIVE_58
187.3
B_CELL_NAIVE_59
187.1
B_CELL_NAIVE_60
187.0
B_CELL_NAIVE_61
186.9
B_CELL_NAIVE_62
186.9
B_CELL_NAIVE_63
186.2
B_CELL_NAIVE_64
186.2
B_CELL_NAIVE_65
186.0
B_CELL_NAIVE_66
185.1
B_CELL_NAIVE_67
184.9
B_CELL_NAIVE_68
184.1
B_CELL_NAIVE_69
183.4
B_CELL_NAIVE_70
183.0
B_CELL_NAIVE_71
182.1
B_CELL_NAIVE_72
180.3
B_CELL_NAIVE_73
177.4
B_CELL_NAIVE_74
177.0
B_CELL_NAIVE_75
176.8
B_CELL_NAIVE_76
176.3
B_CELL_NAIVE_77
176.3
B_CELL_NAIVE_78
176.0
B_CELL_NAIVE_79
175.5
B_CELL_NAIVE_80
174.5
B_CELL_NAIVE_81
174.2
B_CELL_NAIVE_82
171.1
B_CELL_NAIVE_83
170.5
B_CELL_NAIVE_84
169.3
B_CELL_NAIVE_85
164.4
B_CELL_NAIVE_86
163.7
B_CELL_NAIVE_87
160.8
B_CELL_NAIVE_88
157.2
B_CELL_NAIVE_89
155.3
B_CELL_NAIVE_90
154.4
B_CELL_NAIVE_91
126.9
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