A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.0
nTPM
Monaco:
112.1
nTPM
Schmiedel:
64.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.0
HPA sample
nTPM
Classical monocyte nTPM: 22.7
Samples: 6
Max nTPM: 29.6
Min nTPM: 18.2
P10809_1003
20.2
P10809_1020
29.6
P10809_1039
20.6
P10809_1058
18.2
P10809_1080
25.4
P10809_1107
22.1
Intermediate monocyte nTPM: 28.2
Samples: 6
Max nTPM: 35.2
Min nTPM: 23.0
P10809_1004
30.9
P10809_1023
26.9
P10809_1042
35.2
P10809_1061
27.3
P10809_1081
25.9
P10809_1108
23.0
Non-classical monocyte nTPM: 31.0
Samples: 5
Max nTPM: 84.7
Min nTPM: 11.9
P10809_1005
25.8
P10809_1053
17.9
P10809_1072
84.7
P10809_1082
11.9
P10809_1109
14.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.1
Monaco sample
nTPM
Classical monocyte nTPM: 111.9
Samples: 4
Max nTPM: 140.6
Min nTPM: 83.8
RHH5313_R3680
103.3
RHH5221_R3593
140.6
RHH5250_R3622
120.0
RHH5279_R3651
83.8
Intermediate monocyte nTPM: 112.1
Samples: 4
Max nTPM: 168.4
Min nTPM: 75.0
RHH5314_R3681
104.0
RHH5222_R3594
168.4
RHH5251_R3623
75.0
RHH5280_R3652
101.2
Non-classical monocyte nTPM: 100.3
Samples: 4
Max nTPM: 137.8
Min nTPM: 82.7
RHH5315_R3682
93.8
RHH5223_R3595
137.8
RHH5252_R3624
82.7
RHH5281_R3653
86.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.2
Schmiedel sample id
TPM
Classical monocyte TPM: 64.2
Samples: 91
Max TPM: 77.7
Min TPM: 51.2
MONOCYTES_1
77.7
MONOCYTES_2
77.0
MONOCYTES_3
76.7
MONOCYTES_4
75.7
MONOCYTES_5
75.1
MONOCYTES_6
73.5
MONOCYTES_7
72.2
MONOCYTES_8
71.6
MONOCYTES_9
71.6
MONOCYTES_10
71.3
MONOCYTES_11
70.9
MONOCYTES_12
70.2
MONOCYTES_13
70.2
MONOCYTES_14
70.0
MONOCYTES_15
69.7
MONOCYTES_16
69.5
MONOCYTES_17
69.4
MONOCYTES_18
69.4
MONOCYTES_19
69.1
MONOCYTES_20
69.0
MONOCYTES_21
68.9
MONOCYTES_22
68.9
MONOCYTES_23
68.8
MONOCYTES_24
68.6
MONOCYTES_25
68.3
MONOCYTES_26
68.3
MONOCYTES_27
68.3
MONOCYTES_28
68.2
MONOCYTES_29
68.1
MONOCYTES_30
68.0
MONOCYTES_31
67.9
MONOCYTES_32
67.7
MONOCYTES_33
67.6
MONOCYTES_34
67.5
MONOCYTES_35
67.4
MONOCYTES_36
66.8
MONOCYTES_37
66.8
MONOCYTES_38
66.7
MONOCYTES_39
66.7
MONOCYTES_40
66.6
MONOCYTES_41
66.5
MONOCYTES_42
66.3
MONOCYTES_43
66.1
MONOCYTES_44
65.7
MONOCYTES_45
65.5
MONOCYTES_46
64.9
MONOCYTES_47
64.1
MONOCYTES_48
63.9
MONOCYTES_49
63.8
MONOCYTES_50
63.8
MONOCYTES_51
63.8
MONOCYTES_52
63.4
MONOCYTES_53
63.0
MONOCYTES_54
62.9
MONOCYTES_55
62.8
MONOCYTES_56
62.6
MONOCYTES_57
62.1
MONOCYTES_58
62.0
MONOCYTES_59
61.7
MONOCYTES_60
61.6
MONOCYTES_61
61.3
MONOCYTES_62
61.2
MONOCYTES_63
60.8
MONOCYTES_64
60.6
MONOCYTES_65
60.6
MONOCYTES_66
60.5
MONOCYTES_67
60.4
MONOCYTES_68
58.7
MONOCYTES_69
58.5
MONOCYTES_70
58.3
MONOCYTES_71
58.3
MONOCYTES_72
58.2
MONOCYTES_73
58.1
MONOCYTES_74
58.0
MONOCYTES_75
57.8
MONOCYTES_76
57.8
MONOCYTES_77
57.8
MONOCYTES_78
57.6
MONOCYTES_79
57.1
MONOCYTES_80
56.7
MONOCYTES_81
56.2
MONOCYTES_82
55.3
MONOCYTES_83
54.9
MONOCYTES_84
54.8
MONOCYTES_85
54.2
MONOCYTES_86
54.0
MONOCYTES_87
53.8
MONOCYTES_88
52.4
MONOCYTES_89
52.1
MONOCYTES_90
51.2
MONOCYTES_91
51.2
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Non-classical monocyte TPM: 57.0
Samples: 90
Max TPM: 77.8
Min TPM: 44.9
M2_1
77.8
M2_2
71.2
M2_3
71.1
M2_4
71.0
M2_5
66.3
M2_6
65.3
M2_7
65.2
M2_8
65.2
M2_9
63.8
M2_10
63.1
M2_11
63.0
M2_12
62.9
M2_13
62.4
M2_14
62.1
M2_15
61.8
M2_16
61.8
M2_17
61.6
M2_18
61.5
M2_19
61.3
M2_20
61.2
M2_21
60.6
M2_22
60.6
M2_23
60.2
M2_24
60.0
M2_25
59.7
M2_26
59.6
M2_27
59.5
M2_28
59.3
M2_29
59.3
M2_30
59.0
M2_31
58.9
M2_32
58.6
M2_33
58.5
M2_34
58.5
M2_35
58.4
M2_36
58.1
M2_37
58.1
M2_38
58.1
M2_39
58.1
M2_40
58.0
M2_41
57.9
M2_42
57.7
M2_43
57.5
M2_44
57.4
M2_45
57.1
M2_46
57.0
M2_47
56.9
M2_48
56.1
M2_49
55.6
M2_50
55.5
M2_51
55.5
M2_52
55.0
M2_53
55.0
M2_54
55.0
M2_55
54.6
M2_56
54.6
M2_57
54.5
M2_58
54.2
M2_59
54.0
M2_60
53.8
M2_61
53.6
M2_62
53.5
M2_63
53.4
M2_64
53.4
M2_65
53.2
M2_66
53.2
M2_67
53.2
M2_68
53.0
M2_69
53.0
M2_70
52.9
M2_71
52.9
M2_72
52.8
M2_73
52.6
M2_74
52.1
M2_75
51.6
M2_76
51.4
M2_77
51.4
M2_78
50.9
M2_79
50.4
M2_80
50.2
M2_81
50.1
M2_82
50.0
M2_83
49.9
M2_84
49.6
M2_85
49.4
M2_86
48.5
M2_87
48.0
M2_88
46.3
M2_89
46.2
M2_90
44.9
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