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  • CERS2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:289.9 nTPM
HPA Brain:171.5 nTPM
GTEx:289.9 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:229.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 154.2
1981 Female, age 72, midline 192.0
2048 Male, age 55, midline 160.5
2816 Male, age 47, midline 151.8
2565 Male, age 75, midline 135.2
2194 Female, age 79, both hemispheres 131.6
Cervical spinal cord, dorsal horn
nTPM: 171.5
2296 Male, age 66, both hemispheres 291.5
2173 Female, age 72, unknown 250.4
2069 Male, age 47, both hemispheres 172.8
1877 Male, age 55, unknown 138.1
2721 Male, age 90, both hemispheres 92.1
2297 Male, age 75, both hemispheres 84.4
Cervical spinal cord, ventral horn
nTPM: 171.5
2098 Female, age 72, unknown 220.0
2068 Male, age 55, unknown 174.6
2480 Male, age 75, both hemispheres 169.0
2809 Male, age 90, both hemispheres 164.8
2295 Male, age 66, both hemispheres 151.9
2820 Female, age 79, both hemispheres 149.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 289.9
Samples: 204

Max nTPM: 483.5
Min nTPM: 89.3
Std nTPM: 81.3
Median nTPM: 291.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 483.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 480.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 472.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 463.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 451.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 447.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 445.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 443.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 442.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 440.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 434.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 433.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 422.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 409.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 405.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 403.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 403.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 401.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 399.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 398.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 393.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 390.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 389.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 386.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 386.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 385.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 383.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 383.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 375.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 375.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 374.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 372.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 370.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 367.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 361.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 361.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 360.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 358.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 357.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 357.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 357.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 353.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 352.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 350.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 349.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 348.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 348.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 348.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 346.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 346.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 342.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 341.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 339.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 339.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 338.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 337.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 337.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 337.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 336.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 334.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 334.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 333.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 332.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 331.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 331.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 329.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 328.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 327.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 327.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 326.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 324.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 322.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 320.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 320.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 320.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 319.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 316.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 314.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 314.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 314.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 314.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 313.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 309.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 308.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 308.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 307.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 306.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 306.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 305.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 304.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 304.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 303.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 300.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 299.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 298.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 298.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 298.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 298.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 297.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 296.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 295.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 293.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 289.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 289.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 289.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 287.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 287.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 287.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 284.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 284.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 284.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 283.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 283.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 282.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 278.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 275.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 274.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 273.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 273.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 273.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 272.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 271.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 270.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 270.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 267.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 266.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 265.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 263.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 262.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 261.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 261.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 261.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 260.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 257.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 256.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 255.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 254.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 253.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 252.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 252.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 249.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 248.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 247.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 246.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 245.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 245.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 244.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 243.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 243.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 243.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 242.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 241.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 237.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 236.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 236.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 235.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 234.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 232.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 229.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 228.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 228.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 226.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 224.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 219.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 217.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 216.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 215.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 214.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 212.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 209.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 204.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 204.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 203.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 201.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 201.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 201.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 196.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 191.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 185.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 185.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 183.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 180.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 178.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 175.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 173.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 172.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 172.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 168.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 166.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 166.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 164.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 158.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 152.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 147.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 144.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 143.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 141.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 135.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 130.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 121.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 118.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 118.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 115.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 89.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 125.4
FF:10181-103D1 60 years, female 132.6
FF:10159-103A6 76 years, female 118.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 225.4
Samples: 4

Max nTPM: 237.8
Min nTPM: 201.0
Sample A Female 201.0
Sample B Female 234.6
Sample C Male 237.8
Sample D Male 228.3
Ventral spinal cord
nTPM: 229.9
Samples: 4

Max nTPM: 274.8
Min nTPM: 198.3
Sample A Female 236.1
Sample B Female 210.2
Sample C Male 198.3
Sample D Male 274.8

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