MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:143.8 nTPM
HPA Brain:170.2 nTPM
GTEx:143.8 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:112.7 nTPM
Mouse:141.4 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 170.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.0
2666 Male, age 74, left hemisphere 203.6
2586 Male, age 75, left hemisphere 186.6
1827 Male, age 72, unknown 166.8
2019 Male, age 18, unknown 161.9
1870 Female, age 42, unknown 149.2
2828 Female, age 72, unknown 148.4
2219 Male, age 76, both hemispheres 145.7
2411 Female, age 72, unknown 144.3
1833 Male, age 53, unknown 139.6
1830 Male, age 51, unknown 133.6
Dorsal raphe nucleus
nTPM: 147.3
1828 Male, age 53, unknown 165.4
2047 Male, age 72, unknown 155.2
2750 Male, age 76, both hemispheres 142.1
2298 Female, age 72, unknown 139.0
2016 Female, age 72, unknown 134.9
Inferior colliculus
nTPM: 156.0
1890 Male, age 53, unknown 161.8
2849 Male, age 72, unknown 157.0
2097 Female, age 72, unknown 153.5
1848 Female, age 42, unknown 151.4
Median raphe nucleus
nTPM: 153.8
2220 Male, age 76, midline 153.8
Periaquaductal grey, anterior
nTPM: 153.6
2502 Female, age 75, unknown 156.8
1947 Male, age 18, unknown 156.2
1795 Male, age 51, unknown 147.7
Periaquaductal grey, dorsal
nTPM: 147.3
2850 Male, age 76, both hemispheres 160.8
1831 Male, age 72, unknown 147.0
1840 Male, age 53, unknown 145.9
2464 Female, age 72, unknown 135.4
Periaquaductal grey, lateral
nTPM: 145.3
2053 Male, age 18, unknown 156.7
2140 Male, age 76, both hemispheres 144.6
2272 Male, age 74, both hemispheres 134.7
Pretectal area
nTPM: 169.6
1816 Male, age 51, unknown 226.8
2007 Male, age 72, unknown 200.9
1817 Female, age 42, unknown 198.0
1815 Male, age 53, unknown 188.6
1944 Female, age 72, unknown 183.0
2407 Male, age 75, both hemispheres 164.9
2667 Female, age 75, unknown 154.4
2825 Male, age 18, unknown 153.7
2316 Male, age 76, right hemisphere 138.3
2224 Female, age 72, unknown 131.1
2273 Male, age 74, both hemispheres 125.8
Red nucleus
nTPM: 165.5
2588 Male, age 74, left hemisphere 210.9
2725 Female, age 75, unknown 187.9
2584 Male, age 75, left hemisphere 184.3
1821 Female, age 72, unknown 170.7
2503 Female, age 72, unknown 170.6
1954 Female, age 42, unknown 160.1
2785 Male, age 18, unknown 156.8
1865 Male, age 51, unknown 153.1
2823 Male, age 76, right hemisphere 149.9
1904 Male, age 53, unknown 148.3
2227 Male, age 72, unknown 147.4
2769 Male, age 72, unknown 145.8
Substantia nigra
nTPM: 170.2
1916 Female, age 42, unknown 193.3
2665 Male, age 74, both hemispheres 186.5
1889 Female, age 72, unknown 181.5
2241 Male, age 72, unknown 180.9
2583 Male, age 75, right hemisphere 175.6
1941 Male, age 53, unknown 173.8
1851 Male, age 51, unknown 168.3
2699 Male, age 18, unknown 152.9
2590 Female, age 75, unknown 149.3
2409 Female, age 72, unknown 140.0
Superior colliculus
nTPM: 156.5
2261 Male, age 18, unknown 173.1
2087 Female, age 72, unknown 168.5
2664 Male, age 75, both hemispheres 167.5
1796 Male, age 53, unknown 163.8
2668 Female, age 75, unknown 163.8
2587 Male, age 74, left hemisphere 159.8
1839 Male, age 51, unknown 150.3
1895 Male, age 76, right hemisphere 147.5
1913 Female, age 42, unknown 136.4
1995 Male, age 72, unknown 134.5
Ventral tegmental area
nTPM: 151.6
1915 Female, age 42, unknown 162.7
2223 Female, age 72, unknown 157.8
2218 Male, age 76, both hemispheres 157.7
1942 Male, age 51, unknown 152.0
2410 Female, age 72, unknown 146.4
2021 Male, age 53, unknown 133.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 143.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 143.8
Samples: 183

Max nTPM: 289.9
Min nTPM: 82.2
Std nTPM: 32.9
Median nTPM: 138.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 289.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 230.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 228.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 227.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 225.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 219.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 218.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 214.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 208.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 207.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 203.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.3
FF:10158-103A5 76 years, female 74.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 112.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.8
Samples: 4

Max nTPM: 105.3
Min nTPM: 67.0
Sample A Female 105.3
Sample B Female 79.6
Sample C Male 95.3
Sample D Male 67.0
Midbrain
nTPM: 112.5
Samples: 4

Max nTPM: 158.3
Min nTPM: 84.9
Sample A Female 87.4
Sample B Female 84.9
Sample C Male 158.3
Sample D Male 119.3
Periaqueductal gray
nTPM: 79.4
Samples: 3

Max nTPM: 86.4
Min nTPM: 69.3
Sample B Female 82.6
Sample C Male 86.4
Sample D Male 69.3
Superior colliculi
nTPM: 112.8
Samples: 4

Max nTPM: 140.0
Min nTPM: 97.0
Sample A Female 114.4
Sample B Female 99.6
Sample C Male 140.0
Sample D Male 97.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.4
Samples: 4

Max nTPM: 145.6
Min nTPM: 138.4
Sample A Male 145.6
Sample B Male 140.4
Sample C Female 138.4
Sample D Female 141.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
73513729 Antisense, RP_051121_02_F07, Mouse strain C57BL/6J (56 days, male) 2.4

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