On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
143.8
nTPM
HPA Brain:
170.8
nTPM
GTEx:
143.8
nTPM
FANTOM5:
74.3
Scaled Tags Per Million
Macaque:
140.6
nTPM
Mouse:
104.9
nTPM
Rat:
101.0
nTPM
Pig:
121.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
170.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 158.5
2666
Male, age 74, left hemisphere
204.3
2586
Male, age 75, left hemisphere
187.7
1827
Male, age 72, unknown
167.3
2019
Male, age 18, unknown
162.3
1870
Female, age 42, unknown
149.6
2828
Female, age 72, unknown
148.9
2219
Male, age 76, both hemispheres
145.7
2411
Female, age 72, unknown
144.8
1833
Male, age 53, unknown
140.1
1830
Male, age 51, unknown
134.1
Dorsal raphe nucleus nTPM: 147.7
1828
Male, age 53, unknown
165.9
2047
Male, age 72, unknown
155.6
2750
Male, age 76, both hemispheres
142.1
2298
Female, age 72, unknown
139.5
2016
Female, age 72, unknown
135.4
Inferior colliculus nTPM: 156.5
1890
Male, age 53, unknown
162.3
2849
Male, age 72, unknown
157.6
2097
Female, age 72, unknown
154.0
1848
Female, age 42, unknown
151.9
Median raphe nucleus nTPM: 153.8
2220
Male, age 76, midline
153.8
Periaquaductal grey, anterior nTPM: 154.1
2502
Female, age 75, unknown
157.3
1947
Male, age 18, unknown
156.6
1795
Male, age 51, unknown
148.2
Periaquaductal grey, dorsal nTPM: 147.6
2850
Male, age 76, both hemispheres
160.9
1831
Male, age 72, unknown
147.5
1840
Male, age 53, unknown
146.3
2464
Female, age 72, unknown
135.8
Periaquaductal grey, lateral nTPM: 145.7
2053
Male, age 18, unknown
157.2
2140
Male, age 76, both hemispheres
144.7
2272
Male, age 74, both hemispheres
135.2
Pretectal area nTPM: 170.1
1816
Male, age 51, unknown
227.4
2007
Male, age 72, unknown
201.6
1817
Female, age 42, unknown
198.7
1815
Male, age 53, unknown
189.1
1944
Female, age 72, unknown
183.6
2407
Male, age 75, both hemispheres
165.9
2667
Female, age 75, unknown
154.9
2825
Male, age 18, unknown
154.2
2316
Male, age 76, right hemisphere
138.4
2224
Female, age 72, unknown
131.6
2273
Male, age 74, both hemispheres
126.2
Red nucleus nTPM: 166.0
2588
Male, age 74, left hemisphere
211.5
2725
Female, age 75, unknown
188.6
2584
Male, age 75, left hemisphere
185.4
1821
Female, age 72, unknown
171.2
2503
Female, age 72, unknown
171.1
1954
Female, age 42, unknown
160.6
2785
Male, age 18, unknown
157.4
1865
Male, age 51, unknown
153.6
2823
Male, age 76, right hemisphere
150.0
1904
Male, age 53, unknown
148.8
2227
Male, age 72, unknown
147.9
2769
Male, age 72, unknown
146.3
Substantia nigra nTPM: 170.8
1916
Female, age 42, unknown
194.1
2665
Male, age 74, both hemispheres
187.2
1889
Female, age 72, unknown
182.2
2241
Male, age 72, unknown
181.4
2583
Male, age 75, right hemisphere
176.6
1941
Male, age 53, unknown
174.2
1851
Male, age 51, unknown
168.8
2699
Male, age 18, unknown
153.4
2590
Female, age 75, unknown
149.7
2409
Female, age 72, unknown
140.4
Superior colliculus nTPM: 157.1
2261
Male, age 18, unknown
173.7
2087
Female, age 72, unknown
169.0
2664
Male, age 75, both hemispheres
168.6
2668
Female, age 75, unknown
164.4
1796
Male, age 53, unknown
164.3
2587
Male, age 74, left hemisphere
160.4
1839
Male, age 51, unknown
150.8
1895
Male, age 76, right hemisphere
147.5
1913
Female, age 42, unknown
136.9
1995
Male, age 72, unknown
135.0
Ventral tegmental area nTPM: 152.1
1915
Female, age 42, unknown
163.2
2223
Female, age 72, unknown
158.3
2218
Male, age 76, both hemispheres
157.7
1942
Male, age 51, unknown
152.5
2410
Female, age 72, unknown
146.9
2021
Male, age 53, unknown
133.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
143.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 143.8
Samples: 183
Max nTPM: 289.9
Min nTPM: 82.2
Std nTPM: 32.9
Median nTPM: 138.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
289.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
230.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
228.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
227.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
225.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
219.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
218.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
214.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
208.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
207.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
203.7
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
198.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
196.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
193.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
192.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
191.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
191.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
187.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
183.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
183.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
183.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
182.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
181.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
180.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
180.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
179.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
178.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
178.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
174.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
173.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
173.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
171.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
168.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
168.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
168.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
167.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
167.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
167.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
166.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
166.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
164.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
164.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
163.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
163.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
162.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
161.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
161.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
161.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
160.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
160.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
160.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
158.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
158.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
157.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
157.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
156.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
156.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
155.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
155.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
155.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
154.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
153.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
153.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
153.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
152.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
152.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
151.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
151.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
151.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
151.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
150.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
148.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
147.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
146.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
145.0
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
144.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
144.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
144.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
143.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
143.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
143.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
142.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
141.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
140.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
140.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
139.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
139.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
139.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
139.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
139.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
138.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
138.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
138.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
138.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
137.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
137.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
137.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
137.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
136.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
136.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
135.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
135.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
135.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
134.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
133.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
133.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
133.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
132.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
131.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
131.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
130.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
130.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
129.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
128.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
128.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
128.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
127.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
127.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
127.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
127.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
126.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
126.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
126.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
126.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
125.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
125.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
125.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
124.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
124.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
124.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
124.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
124.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
123.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
123.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
122.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
121.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
121.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
121.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
119.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
119.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
119.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
118.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
118.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
117.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
117.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
117.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
117.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
116.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
116.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
116.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
115.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
115.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
112.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
111.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
110.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
110.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
110.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
110.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
109.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
109.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
108.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
108.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
108.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
107.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
106.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
106.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
105.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
105.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
103.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
103.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
101.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
100.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
99.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
99.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
99.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
98.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
97.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
96.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
90.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
89.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
89.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
82.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
82.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
140.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 126.9
Samples: 1
Max nTPM: 126.9
Min nTPM: 126.9
Sample A
126.9
Midbrain nTPM: 129.7
Samples: 1
Max nTPM: 129.7
Min nTPM: 129.7
Sample A
129.7
Superior colliculi nTPM: 140.6
Samples: 1
Max nTPM: 140.6
Min nTPM: 140.6
Sample A
140.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 93.8
Samples: 3
Max nTPM: 105.9
Min nTPM: 79.8
Sample A
Female
105.9
Sample B
Female
79.8
Sample C
Male
95.6
Midbrain nTPM: 121.1
Samples: 3
Max nTPM: 158.7
Min nTPM: 85.2
Sample B
Female
85.2
Sample C
Male
158.7
Sample D
Male
119.4
Periaqueductal gray nTPM: 79.6
Samples: 3
Max nTPM: 86.7
Min nTPM: 69.4
Sample B
Female
82.8
Sample C
Male
86.7
Sample D
Male
69.4
Superior colliculi nTPM: 113.3
Samples: 4
Max nTPM: 140.7
Min nTPM: 97.4
Sample A
Female
115.2
Sample B
Female
100.0
Sample C
Male
140.7
Sample D
Male
97.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 104.9
Samples: 4
Max nTPM: 112.9
Min nTPM: 100.9
Sample A
103.2
Sample B
112.9
Sample C
100.9
Sample D
102.6
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 101.0
Samples: 4
Max nTPM: 104.2
Min nTPM: 98.0
Sample A
104.2
Sample A
99.3
Sample A
102.6
Sample A
98.0
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The Human Protein Atlas project is funded
