MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA Brain:24.6 nTPM
GTEx:21.5 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:33.8 nTPM
Allen mouse:7.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
2411 Female, age 72, unknown 26.7
1870 Female, age 42, unknown 24.3
2828 Female, age 72, unknown 24.1
1830 Male, age 51, unknown 22.2
2019 Male, age 18, unknown 21.9
2586 Male, age 75, left hemisphere 21.4
1833 Male, age 53, unknown 20.5
2219 Male, age 76, both hemispheres 15.6
2666 Male, age 74, left hemisphere 15.5
1827 Male, age 72, unknown 15.2
Dorsal raphe nucleus
nTPM: 20.0
2750 Male, age 76, both hemispheres 27.3
1828 Male, age 53, unknown 19.2
2016 Female, age 72, unknown 18.4
2047 Male, age 72, unknown 17.8
2298 Female, age 72, unknown 17.5
Inferior colliculus
nTPM: 18.1
1890 Male, age 53, unknown 19.1
2097 Female, age 72, unknown 19.1
1848 Female, age 42, unknown 18.4
2849 Male, age 72, unknown 15.9
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Periaquaductal grey, anterior
nTPM: 19.8
2502 Female, age 75, unknown 26.0
1795 Male, age 51, unknown 16.9
1947 Male, age 18, unknown 16.6
Periaquaductal grey, dorsal
nTPM: 13.1
2464 Female, age 72, unknown 18.0
1831 Male, age 72, unknown 14.0
1840 Male, age 53, unknown 12.1
2850 Male, age 76, both hemispheres 8.3
Periaquaductal grey, lateral
nTPM: 13.0
2053 Male, age 18, unknown 15.3
2272 Male, age 74, both hemispheres 13.3
2140 Male, age 76, both hemispheres 10.5
Pretectal area
nTPM: 17.0
1817 Female, age 42, unknown 22.6
2007 Male, age 72, unknown 19.8
2667 Female, age 75, unknown 18.1
1816 Male, age 51, unknown 17.8
2825 Male, age 18, unknown 17.5
1815 Male, age 53, unknown 17.1
2273 Male, age 74, both hemispheres 16.6
2316 Male, age 76, right hemisphere 15.9
2407 Male, age 75, both hemispheres 14.1
2224 Female, age 72, unknown 14.0
1944 Female, age 72, unknown 13.9
Red nucleus
nTPM: 24.6
2503 Female, age 72, unknown 28.4
2769 Male, age 72, unknown 28.2
2227 Male, age 72, unknown 27.5
1821 Female, age 72, unknown 26.6
1865 Male, age 51, unknown 26.3
1954 Female, age 42, unknown 26.2
1904 Male, age 53, unknown 25.1
2785 Male, age 18, unknown 23.2
2588 Male, age 74, left hemisphere 22.8
2823 Male, age 76, right hemisphere 20.8
2584 Male, age 75, left hemisphere 20.2
2725 Female, age 75, unknown 19.8
Substantia nigra
nTPM: 18.6
2665 Male, age 74, both hemispheres 27.8
1851 Male, age 51, unknown 22.1
1916 Female, age 42, unknown 21.9
2583 Male, age 75, right hemisphere 20.8
1889 Female, age 72, unknown 18.9
2590 Female, age 75, unknown 16.5
1941 Male, age 53, unknown 16.4
2699 Male, age 18, unknown 15.1
2241 Male, age 72, unknown 14.3
2409 Female, age 72, unknown 12.1
Superior colliculus
nTPM: 18.5
1913 Female, age 42, unknown 23.8
1995 Male, age 72, unknown 22.9
2261 Male, age 18, unknown 20.4
2587 Male, age 74, left hemisphere 18.5
1796 Male, age 53, unknown 18.4
2087 Female, age 72, unknown 18.1
2668 Female, age 75, unknown 17.2
1839 Male, age 51, unknown 16.7
1895 Male, age 76, right hemisphere 15.8
2664 Male, age 75, both hemispheres 12.9
Ventral tegmental area
nTPM: 21.8
2223 Female, age 72, unknown 24.1
2410 Female, age 72, unknown 24.1
2021 Male, age 53, unknown 23.0
1915 Female, age 42, unknown 21.9
2218 Male, age 76, both hemispheres 19.5
1942 Male, age 51, unknown 17.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.5
Samples: 183

Max nTPM: 56.9
Min nTPM: 6.6
Std nTPM: 8.4
Median nTPM: 19.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 56.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 47.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 47.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 45.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 41.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 39.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 38.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 38.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 37.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 37.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 27.8
Sample A Female 30.6
Sample B Female 30.1
Sample C Male 27.8
Sample D Male 31.4
Midbrain
nTPM: 30.1
Samples: 4

Max nTPM: 39.3
Min nTPM: 22.9
Sample A Female 39.3
Sample B Female 22.9
Sample C Male 34.2
Sample D Male 24.1
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 17.7
Min nTPM: 15.9
Sample B Female 17.7
Sample C Male 17.6
Sample D Male 15.9
Superior colliculi
nTPM: 39.8
Samples: 4

Max nTPM: 57.5
Min nTPM: 32.0
Sample A Female 35.8
Sample B Female 57.5
Sample C Male 33.7
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 34.9
Min nTPM: 31.5
Sample A Male 34.9
Sample B Male 31.5
Sample C Female 34.9
Sample D Female 33.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
392924 Antisense, RP_040804_01_H03, Mouse strain C57BL/6J (56 days, male) 7.9

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