MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.4 nTPM
HPA Brain:61.4 nTPM
GTEx:91.4 nTPM
FANTOM5:95.2 Scaled Tags Per Million
Pig:28.6 nTPM
Mouse:33.7 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2586 Male, age 75, left hemisphere 94.5
1827 Male, age 72, unknown 64.5
2666 Male, age 74, left hemisphere 63.8
2019 Male, age 18, unknown 61.5
2411 Female, age 72, unknown 59.0
2828 Female, age 72, unknown 55.7
1870 Female, age 42, unknown 54.4
1833 Male, age 53, unknown 48.7
1830 Male, age 51, unknown 47.7
2219 Male, age 76, both hemispheres 42.5
Dorsal raphe nucleus
nTPM: 58.4
2298 Female, age 72, unknown 69.1
2047 Male, age 72, unknown 57.6
1828 Male, age 53, unknown 56.7
2016 Female, age 72, unknown 55.3
2750 Male, age 76, both hemispheres 53.4
Inferior colliculus
nTPM: 54.3
2097 Female, age 72, unknown 62.1
1890 Male, age 53, unknown 59.0
1848 Female, age 42, unknown 50.4
2849 Male, age 72, unknown 45.4
Median raphe nucleus
nTPM: 43.2
2220 Male, age 76, midline 43.2
Periaquaductal grey, anterior
nTPM: 61.4
1947 Male, age 18, unknown 63.1
2502 Female, age 75, unknown 61.0
1795 Male, age 51, unknown 60.2
Periaquaductal grey, dorsal
nTPM: 52.2
1840 Male, age 53, unknown 59.3
2464 Female, age 72, unknown 53.0
1831 Male, age 72, unknown 51.8
2850 Male, age 76, both hemispheres 44.9
Periaquaductal grey, lateral
nTPM: 46.1
2053 Male, age 18, unknown 54.4
2140 Male, age 76, both hemispheres 45.3
2272 Male, age 74, both hemispheres 38.5
Pretectal area
nTPM: 59.9
1816 Male, age 51, unknown 76.4
2007 Male, age 72, unknown 74.0
1817 Female, age 42, unknown 66.6
1815 Male, age 53, unknown 65.7
1944 Female, age 72, unknown 61.3
2407 Male, age 75, both hemispheres 56.4
2667 Female, age 75, unknown 54.9
2316 Male, age 76, right hemisphere 53.1
2825 Male, age 18, unknown 51.1
2224 Female, age 72, unknown 50.3
2273 Male, age 74, both hemispheres 49.2
Red nucleus
nTPM: 56.5
2584 Male, age 75, left hemisphere 65.7
1821 Female, age 72, unknown 63.3
2785 Male, age 18, unknown 60.7
2769 Male, age 72, unknown 58.2
1904 Male, age 53, unknown 56.4
2503 Female, age 72, unknown 56.1
1865 Male, age 51, unknown 55.3
2227 Male, age 72, unknown 54.7
1954 Female, age 42, unknown 54.4
2588 Male, age 74, left hemisphere 53.8
2725 Female, age 75, unknown 51.6
2823 Male, age 76, right hemisphere 48.1
Substantia nigra
nTPM: 56.5
2583 Male, age 75, right hemisphere 69.6
2665 Male, age 74, both hemispheres 63.7
1851 Male, age 51, unknown 63.3
1916 Female, age 42, unknown 58.4
1889 Female, age 72, unknown 56.3
2409 Female, age 72, unknown 53.3
2590 Female, age 75, unknown 53.3
1941 Male, age 53, unknown 51.5
2241 Male, age 72, unknown 51.5
2699 Male, age 18, unknown 44.2
Superior colliculus
nTPM: 60.3
2668 Female, age 75, unknown 74.8
2664 Male, age 75, both hemispheres 73.6
2261 Male, age 18, unknown 62.8
1796 Male, age 53, unknown 60.3
1913 Female, age 42, unknown 56.9
1995 Male, age 72, unknown 56.2
2087 Female, age 72, unknown 56.1
1839 Male, age 51, unknown 54.8
1895 Male, age 76, right hemisphere 54.0
2587 Male, age 74, left hemisphere 54.0
Ventral tegmental area
nTPM: 52.4
2410 Female, age 72, unknown 62.9
1915 Female, age 42, unknown 61.8
2021 Male, age 53, unknown 49.3
1942 Male, age 51, unknown 49.1
2223 Female, age 72, unknown 46.5
2218 Male, age 76, both hemispheres 44.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 91.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.4
Samples: 183

Max nTPM: 156.1
Min nTPM: 48.1
Std nTPM: 19.0
Median nTPM: 88.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 156.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 151.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 146.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 135.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 132.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 130.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 129.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 125.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 125.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 124.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.2
FF:10158-103A5 76 years, female 95.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 23.8
Sample A Female 32.2
Sample B Female 26.8
Sample C Male 25.4
Sample D Male 23.8
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 34.3
Min nTPM: 22.1
Sample A Female 34.3
Sample B Female 29.8
Sample C Male 23.3
Sample D Male 22.1
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 27.6
Min nTPM: 24.4
Sample B Female 24.4
Sample C Male 27.6
Sample D Male 26.2
Superior colliculi
nTPM: 28.6
Samples: 4

Max nTPM: 31.2
Min nTPM: 24.3
Sample A Female 31.2
Sample B Female 29.7
Sample C Male 29.3
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 32.1
Sample A Male 32.1
Sample B Male 35.4
Sample C Female 32.1
Sample D Female 35.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69134661 Antisense, RP_050321_03_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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