MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.7 nTPM
HPA Brain:43.7 nTPM
GTEx:71.7 nTPM
FANTOM5:84.0 Scaled Tags Per Million
Pig:31.2 nTPM
Mouse:91.5 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.3
2586 Male, age 75, left hemisphere 55.5
2019 Male, age 18, unknown 46.7
2411 Female, age 72, unknown 46.3
1870 Female, age 42, unknown 43.5
2666 Male, age 74, left hemisphere 42.7
1827 Male, age 72, unknown 41.7
1833 Male, age 53, unknown 41.0
1830 Male, age 51, unknown 36.7
2828 Female, age 72, unknown 35.0
2219 Male, age 76, both hemispheres 34.3
Dorsal raphe nucleus
nTPM: 43.7
2298 Female, age 72, unknown 54.1
2750 Male, age 76, both hemispheres 44.1
1828 Male, age 53, unknown 42.6
2047 Male, age 72, unknown 41.6
2016 Female, age 72, unknown 36.2
Inferior colliculus
nTPM: 41.4
2097 Female, age 72, unknown 46.1
2849 Male, age 72, unknown 40.6
1890 Male, age 53, unknown 39.5
1848 Female, age 42, unknown 39.4
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Periaquaductal grey, anterior
nTPM: 40.3
1947 Male, age 18, unknown 41.7
1795 Male, age 51, unknown 39.6
2502 Female, age 75, unknown 39.5
Periaquaductal grey, dorsal
nTPM: 39.6
2850 Male, age 76, both hemispheres 42.4
1840 Male, age 53, unknown 41.4
2464 Female, age 72, unknown 38.7
1831 Male, age 72, unknown 36.0
Periaquaductal grey, lateral
nTPM: 35.7
2140 Male, age 76, both hemispheres 36.4
2053 Male, age 18, unknown 35.7
2272 Male, age 74, both hemispheres 34.9
Pretectal area
nTPM: 41.5
1817 Female, age 42, unknown 53.0
2007 Male, age 72, unknown 50.2
1816 Male, age 51, unknown 46.2
1815 Male, age 53, unknown 43.3
2224 Female, age 72, unknown 42.3
1944 Female, age 72, unknown 41.9
2273 Male, age 74, both hemispheres 40.9
2667 Female, age 75, unknown 39.0
2825 Male, age 18, unknown 36.4
2316 Male, age 76, right hemisphere 33.3
2407 Male, age 75, both hemispheres 30.4
Red nucleus
nTPM: 43.1
1821 Female, age 72, unknown 54.0
1865 Male, age 51, unknown 46.0
2725 Female, age 75, unknown 44.0
2769 Male, age 72, unknown 44.0
2785 Male, age 18, unknown 44.0
1904 Male, age 53, unknown 43.6
2503 Female, age 72, unknown 43.5
2227 Male, age 72, unknown 42.9
1954 Female, age 42, unknown 42.6
2823 Male, age 76, right hemisphere 38.3
2584 Male, age 75, left hemisphere 38.1
2588 Male, age 74, left hemisphere 36.3
Substantia nigra
nTPM: 42.8
1916 Female, age 42, unknown 53.1
1851 Male, age 51, unknown 47.7
1941 Male, age 53, unknown 46.8
1889 Female, age 72, unknown 46.0
2241 Male, age 72, unknown 45.2
2583 Male, age 75, right hemisphere 40.5
2665 Male, age 74, both hemispheres 39.7
2699 Male, age 18, unknown 37.9
2409 Female, age 72, unknown 36.2
2590 Female, age 75, unknown 34.9
Superior colliculus
nTPM: 39.1
2668 Female, age 75, unknown 49.5
2587 Male, age 74, left hemisphere 41.7
2261 Male, age 18, unknown 41.5
1796 Male, age 53, unknown 40.0
1913 Female, age 42, unknown 39.2
1839 Male, age 51, unknown 37.6
1895 Male, age 76, right hemisphere 36.7
2087 Female, age 72, unknown 36.2
2664 Male, age 75, both hemispheres 34.9
1995 Male, age 72, unknown 34.1
Ventral tegmental area
nTPM: 43.7
2410 Female, age 72, unknown 51.6
1915 Female, age 42, unknown 47.6
2223 Female, age 72, unknown 47.4
2218 Male, age 76, both hemispheres 40.2
1942 Male, age 51, unknown 38.3
2021 Male, age 53, unknown 36.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.7
Samples: 183

Max nTPM: 159.5
Min nTPM: 43.8
Std nTPM: 15.8
Median nTPM: 69.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 159.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 124.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 112.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 112.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 107.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 104.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 104.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 103.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 102.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 101.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 98.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.0
FF:10158-103A5 76 years, female 84.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.2
Samples: 4

Max nTPM: 42.1
Min nTPM: 20.8
Sample A Female 42.1
Sample B Female 25.6
Sample C Male 36.1
Sample D Male 20.8
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 31.5
Min nTPM: 25.7
Sample A Female 31.5
Sample B Female 25.7
Sample C Male 27.2
Sample D Male 29.7
Periaqueductal gray
nTPM: 27.2
Samples: 3

Max nTPM: 31.0
Min nTPM: 23.9
Sample B Female 23.9
Sample C Male 31.0
Sample D Male 26.6
Superior colliculi
nTPM: 29.0
Samples: 4

Max nTPM: 34.1
Min nTPM: 25.2
Sample A Female 34.1
Sample B Female 25.2
Sample C Male 29.8
Sample D Male 26.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.6
Samples: 4

Max nTPM: 97.7
Min nTPM: 85.4
Sample A Male 85.4
Sample B Male 93.7
Sample C Female 89.4
Sample D Female 97.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
2303 Antisense, RP_040407_02_G07, Mouse strain C57BL/6J (56 days, male) 4.7
2304 Antisense, RP_040407_02_G07, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo