MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:225.1 nTPM
HPA Brain:167.4 nTPM
GTEx:225.1 nTPM
FANTOM5:99.4 Scaled Tags Per Million
Pig:112.1 nTPM
Mouse:99.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 167.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.6
2411 Female, age 72, unknown 167.9
2586 Male, age 75, left hemisphere 167.5
1870 Female, age 42, unknown 161.0
2019 Male, age 18, unknown 154.3
1827 Male, age 72, unknown 152.2
1833 Male, age 53, unknown 140.6
1830 Male, age 51, unknown 131.1
2828 Female, age 72, unknown 130.3
2666 Male, age 74, left hemisphere 107.9
2219 Male, age 76, both hemispheres 103.4
Dorsal raphe nucleus
nTPM: 167.4
2298 Female, age 72, unknown 188.7
2016 Female, age 72, unknown 175.1
2047 Male, age 72, unknown 164.7
1828 Male, age 53, unknown 163.8
2750 Male, age 76, both hemispheres 144.6
Inferior colliculus
nTPM: 156.9
2097 Female, age 72, unknown 179.9
1890 Male, age 53, unknown 159.3
1848 Female, age 42, unknown 152.4
2849 Male, age 72, unknown 135.8
Median raphe nucleus
nTPM: 144.0
2220 Male, age 76, midline 144.0
Periaquaductal grey, anterior
nTPM: 146.8
2502 Female, age 75, unknown 156.6
1947 Male, age 18, unknown 144.9
1795 Male, age 51, unknown 139.0
Periaquaductal grey, dorsal
nTPM: 166.7
1840 Male, age 53, unknown 182.7
2850 Male, age 76, both hemispheres 178.0
1831 Male, age 72, unknown 153.2
2464 Female, age 72, unknown 152.7
Periaquaductal grey, lateral
nTPM: 158.9
2053 Male, age 18, unknown 168.0
2272 Male, age 74, both hemispheres 156.0
2140 Male, age 76, both hemispheres 152.9
Pretectal area
nTPM: 158.3
2273 Male, age 74, both hemispheres 191.3
1817 Female, age 42, unknown 174.3
2224 Female, age 72, unknown 172.0
1944 Female, age 72, unknown 168.1
2667 Female, age 75, unknown 166.7
1816 Male, age 51, unknown 166.6
2007 Male, age 72, unknown 150.5
1815 Male, age 53, unknown 149.2
2825 Male, age 18, unknown 143.0
2316 Male, age 76, right hemisphere 138.3
2407 Male, age 75, both hemispheres 121.5
Red nucleus
nTPM: 140.3
1821 Female, age 72, unknown 195.2
1954 Female, age 42, unknown 150.4
1865 Male, age 51, unknown 146.0
2769 Male, age 72, unknown 145.9
2503 Female, age 72, unknown 145.1
1904 Male, age 53, unknown 144.5
2823 Male, age 76, right hemisphere 140.2
2785 Male, age 18, unknown 137.9
2725 Female, age 75, unknown 136.8
2227 Male, age 72, unknown 134.6
2584 Male, age 75, left hemisphere 105.6
2588 Male, age 74, left hemisphere 101.4
Substantia nigra
nTPM: 154.9
2241 Male, age 72, unknown 181.2
1889 Female, age 72, unknown 171.1
2699 Male, age 18, unknown 162.7
2409 Female, age 72, unknown 161.3
1851 Male, age 51, unknown 161.1
1916 Female, age 42, unknown 153.5
2583 Male, age 75, right hemisphere 146.6
2665 Male, age 74, both hemispheres 140.6
1941 Male, age 53, unknown 137.2
2590 Female, age 75, unknown 133.2
Superior colliculus
nTPM: 148.2
2664 Male, age 75, both hemispheres 165.8
2668 Female, age 75, unknown 153.2
1913 Female, age 42, unknown 151.6
2587 Male, age 74, left hemisphere 150.3
1995 Male, age 72, unknown 148.9
1796 Male, age 53, unknown 147.5
2087 Female, age 72, unknown 147.0
1895 Male, age 76, right hemisphere 144.6
1839 Male, age 51, unknown 138.6
2261 Male, age 18, unknown 134.1
Ventral tegmental area
nTPM: 150.4
2410 Female, age 72, unknown 161.4
1942 Male, age 51, unknown 154.4
2021 Male, age 53, unknown 153.9
2223 Female, age 72, unknown 148.5
1915 Female, age 42, unknown 148.3
2218 Male, age 76, both hemispheres 135.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 225.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 225.1
Samples: 183

Max nTPM: 429.0
Min nTPM: 112.2
Std nTPM: 55.7
Median nTPM: 216.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 429.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 422.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 372.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 370.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 363.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 359.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 352.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 345.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 335.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 334.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 319.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 99.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.4
FF:10158-103A5 76 years, female 99.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 112.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 103.0
Samples: 4

Max nTPM: 124.7
Min nTPM: 88.2
Sample A Female 124.7
Sample B Female 88.2
Sample C Male 107.1
Sample D Male 92.0
Midbrain
nTPM: 112.1
Samples: 4

Max nTPM: 128.6
Min nTPM: 93.3
Sample A Female 128.6
Sample B Female 99.6
Sample C Male 127.0
Sample D Male 93.3
Periaqueductal gray
nTPM: 90.9
Samples: 3

Max nTPM: 99.0
Min nTPM: 81.0
Sample B Female 81.0
Sample C Male 99.0
Sample D Male 92.8
Superior colliculi
nTPM: 104.5
Samples: 4

Max nTPM: 124.4
Min nTPM: 81.9
Sample A Female 105.9
Sample B Female 81.9
Sample C Male 124.4
Sample D Male 105.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 99.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.8
Samples: 4

Max nTPM: 107.3
Min nTPM: 92.9
Sample A Male 107.3
Sample B Male 100.7
Sample C Female 92.9
Sample D Female 98.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68861736 Antisense, RP_050224_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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