A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.0
nTPM
Monaco:
35.4
nTPM
Schmiedel:
113.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
HPA sample
nTPM
NK-cell nTPM: 2.0
Samples: 6
Max nTPM: 3.3
Min nTPM: 0.3
P10809_1013
2.5
P10809_1033
3.3
P10809_1052
2.0
P10809_1071
0.6
P10809_1093
0.3
P10809_1103
3.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.4
Monaco sample
nTPM
NK-cell nTPM: 35.4
Samples: 4
Max nTPM: 40.1
Min nTPM: 30.6
RHH5316_R3683
40.1
RHH5224_R3596
39.8
RHH5253_R3625
30.6
RHH5282_R3654
31.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.1
Schmiedel sample id
TPM
NK-cell TPM: 113.1
Samples: 90
Max TPM: 183.0
Min TPM: 62.0
NK_1
183.0
NK_2
173.4
NK_3
171.4
NK_4
170.7
NK_5
168.1
NK_6
156.5
NK_7
155.7
NK_8
155.6
NK_9
155.3
NK_10
155.0
NK_11
151.9
NK_12
151.6
NK_13
149.7
NK_14
149.4
NK_15
143.9
NK_16
142.7
NK_17
140.9
NK_18
140.6
NK_19
137.6
NK_20
137.2
NK_21
136.8
NK_22
134.3
NK_23
133.0
NK_24
127.4
NK_25
126.7
NK_26
125.4
NK_27
125.3
NK_28
124.6
NK_29
124.2
NK_30
123.7
NK_31
123.4
NK_32
122.4
NK_33
122.2
NK_34
120.9
NK_35
119.7
NK_36
116.7
NK_37
116.1
NK_38
114.9
NK_39
113.9
NK_40
113.5
NK_41
113.4
NK_42
111.3
NK_43
111.3
NK_44
110.9
NK_45
109.6
NK_46
109.2
NK_47
109.0
NK_48
109.0
NK_49
107.6
NK_50
105.8
NK_51
105.4
NK_52
104.5
NK_53
104.0
NK_54
102.4
NK_55
101.8
NK_56
101.2
NK_57
100.9
NK_58
100.5
NK_59
99.2
NK_60
98.9
NK_61
98.7
NK_62
98.6
NK_63
98.5
NK_64
97.1
NK_65
96.3
NK_66
96.0
NK_67
94.4
NK_68
93.5
NK_69
92.9
NK_70
89.9
NK_71
89.6
NK_72
89.3
NK_73
88.7
NK_74
88.1
NK_75
82.4
NK_76
81.1
NK_77
80.8
NK_78
80.2
NK_79
80.0
NK_80
79.9
NK_81
79.0
NK_82
77.6
NK_83
72.7
NK_84
72.0
NK_85
71.0
NK_86
71.0
NK_87
70.6
NK_88
69.6
NK_89
64.6
NK_90
62.0
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