A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
38.4
nTPM
Schmiedel:
80.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.3
P10809_1003
1.5
P10809_1020
0.6
P10809_1039
0.3
P10809_1058
0.7
P10809_1080
1.1
P10809_1107
0.7
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 3.0
Min nTPM: 0.2
P10809_1004
1.4
P10809_1023
0.2
P10809_1042
0.9
P10809_1061
3.0
P10809_1081
1.0
P10809_1108
0.6
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 3.8
Min nTPM: 1.3
P10809_1005
3.2
P10809_1053
1.3
P10809_1072
3.8
P10809_1082
1.3
P10809_1109
2.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Monaco sample
nTPM
Classical monocyte nTPM: 13.1
Samples: 4
Max nTPM: 14.3
Min nTPM: 11.1
RHH5313_R3680
14.3
RHH5221_R3593
12.8
RHH5250_R3622
11.1
RHH5279_R3651
14.1
Intermediate monocyte nTPM: 28.8
Samples: 4
Max nTPM: 38.2
Min nTPM: 25.0
RHH5314_R3681
25.0
RHH5222_R3594
25.7
RHH5251_R3623
38.2
RHH5280_R3652
26.2
Non-classical monocyte nTPM: 38.4
Samples: 4
Max nTPM: 52.1
Min nTPM: 33.1
RHH5315_R3682
52.1
RHH5223_R3595
33.8
RHH5252_R3624
33.1
RHH5281_R3653
34.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.3
Schmiedel sample id
TPM
Classical monocyte TPM: 24.2
Samples: 91
Max TPM: 35.2
Min TPM: 8.8
MONOCYTES_1
35.2
MONOCYTES_2
34.0
MONOCYTES_3
33.1
MONOCYTES_4
32.4
MONOCYTES_5
32.2
MONOCYTES_6
31.3
MONOCYTES_7
30.6
MONOCYTES_8
30.2
MONOCYTES_9
29.4
MONOCYTES_10
29.0
MONOCYTES_11
28.9
MONOCYTES_12
28.4
MONOCYTES_13
27.9
MONOCYTES_14
27.5
MONOCYTES_15
27.4
MONOCYTES_16
27.2
MONOCYTES_17
27.1
MONOCYTES_18
27.1
MONOCYTES_19
27.1
MONOCYTES_20
26.9
MONOCYTES_21
26.8
MONOCYTES_22
26.8
MONOCYTES_23
26.3
MONOCYTES_24
26.2
MONOCYTES_25
26.0
MONOCYTES_26
25.9
MONOCYTES_27
25.7
MONOCYTES_28
25.7
MONOCYTES_29
25.7
MONOCYTES_30
25.7
MONOCYTES_31
25.6
MONOCYTES_32
25.6
MONOCYTES_33
25.5
MONOCYTES_34
25.5
MONOCYTES_35
25.5
MONOCYTES_36
25.5
MONOCYTES_37
25.4
MONOCYTES_38
25.3
MONOCYTES_39
25.1
MONOCYTES_40
25.1
MONOCYTES_41
24.8
MONOCYTES_42
24.3
MONOCYTES_43
24.1
MONOCYTES_44
23.9
MONOCYTES_45
23.9
MONOCYTES_46
23.9
MONOCYTES_47
23.8
MONOCYTES_48
23.7
MONOCYTES_49
23.6
MONOCYTES_50
23.6
MONOCYTES_51
23.5
MONOCYTES_52
23.5
MONOCYTES_53
23.5
MONOCYTES_54
23.3
MONOCYTES_55
23.2
MONOCYTES_56
23.2
MONOCYTES_57
23.0
MONOCYTES_58
23.0
MONOCYTES_59
23.0
MONOCYTES_60
22.8
MONOCYTES_61
22.5
MONOCYTES_62
22.4
MONOCYTES_63
22.4
MONOCYTES_64
22.3
MONOCYTES_65
22.2
MONOCYTES_66
22.0
MONOCYTES_67
22.0
MONOCYTES_68
22.0
MONOCYTES_69
21.8
MONOCYTES_70
21.7
MONOCYTES_71
21.3
MONOCYTES_72
21.2
MONOCYTES_73
21.1
MONOCYTES_74
20.8
MONOCYTES_75
20.8
MONOCYTES_76
20.5
MONOCYTES_77
20.4
MONOCYTES_78
20.3
MONOCYTES_79
20.2
MONOCYTES_80
20.1
MONOCYTES_81
19.9
MONOCYTES_82
19.7
MONOCYTES_83
19.6
MONOCYTES_84
19.3
MONOCYTES_85
19.0
MONOCYTES_86
18.9
MONOCYTES_87
18.8
MONOCYTES_88
17.8
MONOCYTES_89
17.8
MONOCYTES_90
15.8
MONOCYTES_91
8.8
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Non-classical monocyte TPM: 80.3
Samples: 90
Max TPM: 120.9
Min TPM: 50.9
M2_1
120.9
M2_2
110.3
M2_3
109.9
M2_4
106.7
M2_5
101.9
M2_6
101.5
M2_7
100.1
M2_8
99.6
M2_9
97.8
M2_10
97.6
M2_11
97.5
M2_12
95.8
M2_13
95.1
M2_14
94.5
M2_15
93.4
M2_16
91.3
M2_17
91.1
M2_18
91.0
M2_19
90.7
M2_20
90.4
M2_21
90.3
M2_22
90.0
M2_23
90.0
M2_24
89.8
M2_25
89.7
M2_26
89.6
M2_27
89.2
M2_28
88.9
M2_29
88.8
M2_30
88.5
M2_31
88.4
M2_32
88.3
M2_33
87.8
M2_34
87.5
M2_35
87.4
M2_36
86.0
M2_37
85.9
M2_38
85.7
M2_39
85.6
M2_40
84.9
M2_41
83.3
M2_42
83.0
M2_43
83.0
M2_44
83.0
M2_45
82.8
M2_46
82.1
M2_47
80.7
M2_48
80.3
M2_49
79.3
M2_50
78.4
M2_51
76.8
M2_52
76.2
M2_53
76.2
M2_54
75.3
M2_55
74.7
M2_56
74.3
M2_57
74.2
M2_58
74.0
M2_59
74.0
M2_60
73.8
M2_61
73.6
M2_62
72.7
M2_63
72.5
M2_64
72.5
M2_65
72.1
M2_66
70.8
M2_67
69.7
M2_68
69.7
M2_69
68.6
M2_70
68.5
M2_71
68.3
M2_72
68.2
M2_73
66.2
M2_74
65.5
M2_75
65.4
M2_76
65.1
M2_77
64.6
M2_78
64.1
M2_79
61.9
M2_80
60.5
M2_81
60.4
M2_82
60.3
M2_83
59.5
M2_84
59.2
M2_85
58.9
M2_86
55.9
M2_87
52.3
M2_88
51.8
M2_89
51.2
M2_90
50.9
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