MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.1 nTPM
HPA Brain:78.0 nTPM
GTEx:69.1 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:17.2 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.6
2019 Male, age 18, unknown 78.5
2586 Male, age 75, left hemisphere 73.5
2828 Female, age 72, unknown 69.8
1870 Female, age 42, unknown 69.4
2411 Female, age 72, unknown 68.0
1833 Male, age 53, unknown 66.4
1827 Male, age 72, unknown 63.9
1830 Male, age 51, unknown 61.4
2666 Male, age 74, left hemisphere 55.6
2219 Male, age 76, both hemispheres 50.0
Dorsal raphe nucleus
nTPM: 78.0
2298 Female, age 72, unknown 94.8
1828 Male, age 53, unknown 78.4
2016 Female, age 72, unknown 76.9
2047 Male, age 72, unknown 73.1
2750 Male, age 76, both hemispheres 66.8
Inferior colliculus
nTPM: 70.1
2097 Female, age 72, unknown 89.3
1890 Male, age 53, unknown 73.7
2849 Male, age 72, unknown 59.3
1848 Female, age 42, unknown 58.3
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Periaquaductal grey, anterior
nTPM: 61.9
1795 Male, age 51, unknown 63.8
1947 Male, age 18, unknown 62.9
2502 Female, age 75, unknown 59.1
Periaquaductal grey, dorsal
nTPM: 64.0
2850 Male, age 76, both hemispheres 71.6
1840 Male, age 53, unknown 66.4
2464 Female, age 72, unknown 61.2
1831 Male, age 72, unknown 56.6
Periaquaductal grey, lateral
nTPM: 65.9
2272 Male, age 74, both hemispheres 71.4
2140 Male, age 76, both hemispheres 70.2
2053 Male, age 18, unknown 55.9
Pretectal area
nTPM: 65.5
2273 Male, age 74, both hemispheres 80.4
1817 Female, age 42, unknown 71.1
2007 Male, age 72, unknown 70.0
2667 Female, age 75, unknown 69.2
1944 Female, age 72, unknown 66.0
2407 Male, age 75, both hemispheres 64.2
1816 Male, age 51, unknown 64.0
1815 Male, age 53, unknown 62.2
2825 Male, age 18, unknown 58.4
2224 Female, age 72, unknown 58.2
2316 Male, age 76, right hemisphere 56.9
Red nucleus
nTPM: 72.1
2785 Male, age 18, unknown 80.8
2227 Male, age 72, unknown 80.6
2769 Male, age 72, unknown 78.6
1904 Male, age 53, unknown 76.3
1821 Female, age 72, unknown 74.4
1865 Male, age 51, unknown 74.4
2503 Female, age 72, unknown 72.9
1954 Female, age 42, unknown 71.0
2725 Female, age 75, unknown 68.7
2823 Male, age 76, right hemisphere 68.3
2588 Male, age 74, left hemisphere 61.3
2584 Male, age 75, left hemisphere 57.3
Substantia nigra
nTPM: 68.7
1916 Female, age 42, unknown 78.9
1851 Male, age 51, unknown 74.5
2583 Male, age 75, right hemisphere 71.8
2665 Male, age 74, both hemispheres 68.2
2409 Female, age 72, unknown 68.0
2590 Female, age 75, unknown 67.6
1941 Male, age 53, unknown 66.6
2699 Male, age 18, unknown 65.1
1889 Female, age 72, unknown 64.5
2241 Male, age 72, unknown 62.0
Superior colliculus
nTPM: 62.6
1995 Male, age 72, unknown 73.7
1913 Female, age 42, unknown 70.3
2668 Female, age 75, unknown 65.0
2087 Female, age 72, unknown 63.9
2587 Male, age 74, left hemisphere 62.5
1796 Male, age 53, unknown 62.4
2261 Male, age 18, unknown 62.1
1839 Male, age 51, unknown 55.7
2664 Male, age 75, both hemispheres 55.5
1895 Male, age 76, right hemisphere 54.6
Ventral tegmental area
nTPM: 68.1
1915 Female, age 42, unknown 72.9
2410 Female, age 72, unknown 72.2
1942 Male, age 51, unknown 70.6
2223 Female, age 72, unknown 68.0
2218 Male, age 76, both hemispheres 64.7
2021 Male, age 53, unknown 59.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 69.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.1
Samples: 183

Max nTPM: 155.4
Min nTPM: 29.0
Std nTPM: 18.4
Median nTPM: 65.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 155.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 146.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 133.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 116.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 105.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 104.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 102.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 101.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 99.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.1
FF:10158-103A5 76 years, female 50.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 11.0
Sample C Male 10.6
Sample D Male 11.2
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 10.8
Sample C Male 9.2
Sample D Male 10.8
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 10.7
Min nTPM: 9.8
Sample B Female 10.7
Sample C Male 9.8
Sample D Male 10.6
Superior colliculi
nTPM: 9.1
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 10.4
Sample C Male 8.6
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.7
Sample A Male 19.2
Sample B Male 17.3
Sample C Female 14.7
Sample D Female 17.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68269281 Antisense, RP_041129_01_D11, Mouse strain C57BL/6J (56 days, male) 0.1
77923131 Antisense, RP_070219_01_C11, Mouse strain C57BL/6J (56 days, male) 0.1

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