MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA Brain:48.1 nTPM
GTEx:44.2 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:13.4 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2019 Male, age 18, unknown 61.7
2666 Male, age 74, left hemisphere 41.0
2219 Male, age 76, both hemispheres 37.5
1833 Male, age 53, unknown 33.4
2586 Male, age 75, left hemisphere 33.1
1870 Female, age 42, unknown 33.0
2411 Female, age 72, unknown 32.6
1830 Male, age 51, unknown 31.7
1827 Male, age 72, unknown 29.0
2828 Female, age 72, unknown 25.6
Dorsal raphe nucleus
nTPM: 37.8
1828 Male, age 53, unknown 52.7
2298 Female, age 72, unknown 35.4
2047 Male, age 72, unknown 35.2
2750 Male, age 76, both hemispheres 33.2
2016 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 33.7
1890 Male, age 53, unknown 40.8
2097 Female, age 72, unknown 35.7
1848 Female, age 42, unknown 29.6
2849 Male, age 72, unknown 28.5
Median raphe nucleus
nTPM: 33.7
2220 Male, age 76, midline 33.7
Periaquaductal grey, anterior
nTPM: 33.4
2502 Female, age 75, unknown 34.7
1947 Male, age 18, unknown 34.1
1795 Male, age 51, unknown 31.4
Periaquaductal grey, dorsal
nTPM: 30.5
2850 Male, age 76, both hemispheres 32.7
1831 Male, age 72, unknown 30.9
1840 Male, age 53, unknown 30.7
2464 Female, age 72, unknown 27.8
Periaquaductal grey, lateral
nTPM: 27.7
2272 Male, age 74, both hemispheres 31.4
2140 Male, age 76, both hemispheres 26.1
2053 Male, age 18, unknown 25.8
Pretectal area
nTPM: 41.5
1817 Female, age 42, unknown 62.7
2007 Male, age 72, unknown 61.8
1944 Female, age 72, unknown 54.7
1815 Male, age 53, unknown 47.9
1816 Male, age 51, unknown 47.1
2667 Female, age 75, unknown 35.5
2273 Male, age 74, both hemispheres 32.1
2224 Female, age 72, unknown 31.3
2407 Male, age 75, both hemispheres 30.6
2316 Male, age 76, right hemisphere 26.4
2825 Male, age 18, unknown 26.0
Red nucleus
nTPM: 41.8
1821 Female, age 72, unknown 57.1
2785 Male, age 18, unknown 54.3
2588 Male, age 74, left hemisphere 44.2
2725 Female, age 75, unknown 42.1
2769 Male, age 72, unknown 39.1
1904 Male, age 53, unknown 39.0
2503 Female, age 72, unknown 38.8
1865 Male, age 51, unknown 38.5
2823 Male, age 76, right hemisphere 38.5
2584 Male, age 75, left hemisphere 37.9
2227 Male, age 72, unknown 36.8
1954 Female, age 42, unknown 35.0
Substantia nigra
nTPM: 48.1
1916 Female, age 42, unknown 58.2
1851 Male, age 51, unknown 57.1
2241 Male, age 72, unknown 56.7
2409 Female, age 72, unknown 55.5
1889 Female, age 72, unknown 53.4
2665 Male, age 74, both hemispheres 52.8
2699 Male, age 18, unknown 38.7
2583 Male, age 75, right hemisphere 36.5
2590 Female, age 75, unknown 36.2
1941 Male, age 53, unknown 35.5
Superior colliculus
nTPM: 33.9
2668 Female, age 75, unknown 45.6
2587 Male, age 74, left hemisphere 39.7
2087 Female, age 72, unknown 37.8
1895 Male, age 76, right hemisphere 37.3
1995 Male, age 72, unknown 30.7
1839 Male, age 51, unknown 30.5
1913 Female, age 42, unknown 30.5
1796 Male, age 53, unknown 30.0
2664 Male, age 75, both hemispheres 29.0
2261 Male, age 18, unknown 27.7
Ventral tegmental area
nTPM: 40.5
2410 Female, age 72, unknown 45.6
1915 Female, age 42, unknown 45.1
2218 Male, age 76, both hemispheres 43.9
2223 Female, age 72, unknown 39.1
1942 Male, age 51, unknown 38.1
2021 Male, age 53, unknown 30.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 183

Max nTPM: 130.5
Min nTPM: 18.6
Std nTPM: 18.1
Median nTPM: 38.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 130.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 117.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 101.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 96.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 94.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.8
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 81.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 81.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 80.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 78.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 78.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 25.8
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 24.9
Sample C Male 25.8
Sample D Male 25.4
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 31.4
Min nTPM: 24.2
Sample A Female 24.7
Sample B Female 24.4
Sample C Male 31.4
Sample D Male 24.2
Periaqueductal gray
nTPM: 25.4
Samples: 3

Max nTPM: 26.8
Min nTPM: 24.7
Sample B Female 24.7
Sample C Male 26.8
Sample D Male 24.8
Superior colliculi
nTPM: 26.9
Samples: 4

Max nTPM: 31.9
Min nTPM: 22.5
Sample A Female 24.8
Sample B Female 22.5
Sample C Male 31.9
Sample D Male 28.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.3
Sample A Male 14.4
Sample B Male 13.2
Sample C Female 11.3
Sample D Female 14.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
74657981 Antisense, RP_060119_03_B04, Mouse strain C57BL/6J (56 days, male) 4.7
74357622 Antisense, RP_060119_03_B04, Mouse strain C57BL/6J (56 days, male) 1.6

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