MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:185.8 nTPM
HPA Brain:281.9 nTPM
GTEx:185.8 nTPM
FANTOM5:148.4 Scaled Tags Per Million
Pig:226.5 nTPM
Mouse:55.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 281.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 203.1
2666 Male, age 74, left hemisphere 290.6
1830 Male, age 51, unknown 256.4
2586 Male, age 75, left hemisphere 245.8
1833 Male, age 53, unknown 227.2
2411 Female, age 72, unknown 200.1
1870 Female, age 42, unknown 183.7
2019 Male, age 18, unknown 176.1
2828 Female, age 72, unknown 170.1
1827 Male, age 72, unknown 141.6
2219 Male, age 76, both hemispheres 139.5
Dorsal raphe nucleus
nTPM: 135.8
2750 Male, age 76, both hemispheres 255.6
1828 Male, age 53, unknown 136.9
2016 Female, age 72, unknown 121.3
2047 Male, age 72, unknown 104.6
2298 Female, age 72, unknown 60.8
Inferior colliculus
nTPM: 117.7
1890 Male, age 53, unknown 135.9
2849 Male, age 72, unknown 129.0
1848 Female, age 42, unknown 126.5
2097 Female, age 72, unknown 79.3
Median raphe nucleus
nTPM: 162.8
2220 Male, age 76, midline 162.8
Periaquaductal grey, anterior
nTPM: 123.0
1947 Male, age 18, unknown 150.3
2502 Female, age 75, unknown 111.5
1795 Male, age 51, unknown 107.1
Periaquaductal grey, dorsal
nTPM: 86.5
2464 Female, age 72, unknown 123.5
1831 Male, age 72, unknown 106.7
1840 Male, age 53, unknown 68.2
2850 Male, age 76, both hemispheres 47.6
Periaquaductal grey, lateral
nTPM: 85.7
2053 Male, age 18, unknown 117.9
2272 Male, age 74, both hemispheres 92.8
2140 Male, age 76, both hemispheres 46.3
Pretectal area
nTPM: 113.7
1815 Male, age 53, unknown 171.9
1817 Female, age 42, unknown 142.6
2407 Male, age 75, both hemispheres 140.4
2825 Male, age 18, unknown 131.8
2007 Male, age 72, unknown 125.9
2316 Male, age 76, right hemisphere 109.0
1816 Male, age 51, unknown 102.3
1944 Female, age 72, unknown 96.8
2667 Female, age 75, unknown 82.5
2224 Female, age 72, unknown 77.5
2273 Male, age 74, both hemispheres 69.7
Red nucleus
nTPM: 281.9
2588 Male, age 74, left hemisphere 366.8
2503 Female, age 72, unknown 316.5
1904 Male, age 53, unknown 306.0
2584 Male, age 75, left hemisphere 303.3
2823 Male, age 76, right hemisphere 298.3
1865 Male, age 51, unknown 292.3
2227 Male, age 72, unknown 270.8
1821 Female, age 72, unknown 266.4
2769 Male, age 72, unknown 261.6
1954 Female, age 42, unknown 252.5
2725 Female, age 75, unknown 248.0
2785 Male, age 18, unknown 200.2
Substantia nigra
nTPM: 184.2
2665 Male, age 74, both hemispheres 244.4
2583 Male, age 75, right hemisphere 223.3
2409 Female, age 72, unknown 211.0
2590 Female, age 75, unknown 202.5
1851 Male, age 51, unknown 181.0
1889 Female, age 72, unknown 167.4
2241 Male, age 72, unknown 162.5
2699 Male, age 18, unknown 155.9
1916 Female, age 42, unknown 149.4
1941 Male, age 53, unknown 144.4
Superior colliculus
nTPM: 154.6
2668 Female, age 75, unknown 219.2
2587 Male, age 74, left hemisphere 202.3
1995 Male, age 72, unknown 177.5
1839 Male, age 51, unknown 172.4
1913 Female, age 42, unknown 164.5
2664 Male, age 75, both hemispheres 137.8
1895 Male, age 76, right hemisphere 129.0
2261 Male, age 18, unknown 125.0
1796 Male, age 53, unknown 113.1
2087 Female, age 72, unknown 105.3
Ventral tegmental area
nTPM: 180.8
2223 Female, age 72, unknown 307.8
2410 Female, age 72, unknown 213.8
2218 Male, age 76, both hemispheres 163.2
1915 Female, age 42, unknown 136.0
1942 Male, age 51, unknown 133.9
2021 Male, age 53, unknown 129.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 185.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.8
Samples: 183

Max nTPM: 508.9
Min nTPM: 28.3
Std nTPM: 104.4
Median nTPM: 156.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 508.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 494.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 481.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 466.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 461.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 439.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 421.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 409.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 396.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 385.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 385.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.4
FF:10158-103A5 76 years, female 148.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 226.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 185.2
Samples: 4

Max nTPM: 268.3
Min nTPM: 120.6
Sample A Female 178.4
Sample B Female 120.6
Sample C Male 173.4
Sample D Male 268.3
Midbrain
nTPM: 226.5
Samples: 4

Max nTPM: 471.1
Min nTPM: 120.4
Sample A Female 471.1
Sample B Female 155.6
Sample C Male 159.0
Sample D Male 120.4
Periaqueductal gray
nTPM: 125.1
Samples: 3

Max nTPM: 130.6
Min nTPM: 115.2
Sample B Female 129.4
Sample C Male 115.2
Sample D Male 130.6
Superior colliculi
nTPM: 146.6
Samples: 4

Max nTPM: 172.0
Min nTPM: 104.8
Sample A Female 141.3
Sample B Female 104.8
Sample C Male 168.4
Sample D Male 172.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 59.3
Min nTPM: 51.9
Sample A Male 56.8
Sample B Male 52.4
Sample C Female 51.9
Sample D Female 59.3

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