A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.8
nTPM
Monaco:
277.3
nTPM
Schmiedel:
17.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.8
HPA sample
nTPM
Memory B-cell nTPM: 32.8
Samples: 6
Max nTPM: 41.7
Min nTPM: 25.3
P10809_1017
28.5
P10809_1025
34.8
P10809_1044
25.3
P10809_1063
41.7
P10809_1092
32.0
P10809_1105
34.5
Naive B-cell nTPM: 25.4
Samples: 6
Max nTPM: 73.7
Min nTPM: 6.5
P10809_1011
6.5
P10809_1029
17.7
P10809_1048
73.7
P10809_1067
20.4
P10809_1091
16.9
P10809_1104
17.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
277.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 49.5
Samples: 4
Max nTPM: 84.9
Min nTPM: 35.6
RHH5310_R3677
84.9
RHH5218_R3590
41.6
RHH5247_R3619
35.9
RHH5276_R3648
35.6
Naive B-cell nTPM: 23.5
Samples: 4
Max nTPM: 26.4
Min nTPM: 18.4
RHH5308_R3675
26.0
RHH5216_R3588
26.4
RHH5245_R3617
18.4
RHH5274_R3646
23.2
Non-switched memory B-cell nTPM: 30.9
Samples: 4
Max nTPM: 34.5
Min nTPM: 27.7
RHH5309_R3676
34.5
RHH5217_R3589
29.2
RHH5246_R3618
27.7
RHH5275_R3647
32.2
Plasmablast nTPM: 277.4
Samples: 4
Max nTPM: 333.4
Min nTPM: 223.6
RHH5312_R3679
248.2
RHH5220_R3592
333.4
RHH5249_R3621
304.3
RHH5278_R3650
223.6
Switched memory B-cell nTPM: 38.0
Samples: 4
Max nTPM: 48.7
Min nTPM: 30.8
RHH5311_R3678
37.7
RHH5219_R3591
34.6
RHH5248_R3620
30.8
RHH5277_R3649
48.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.4
Schmiedel sample id
TPM
Naive B-cell TPM: 17.4
Samples: 91
Max TPM: 24.7
Min TPM: 7.0
B_CELL_NAIVE_1
24.7
B_CELL_NAIVE_2
24.2
B_CELL_NAIVE_3
23.9
B_CELL_NAIVE_4
23.5
B_CELL_NAIVE_5
23.2
B_CELL_NAIVE_6
23.0
B_CELL_NAIVE_7
22.7
B_CELL_NAIVE_8
22.6
B_CELL_NAIVE_9
22.6
B_CELL_NAIVE_10
22.1
B_CELL_NAIVE_11
21.5
B_CELL_NAIVE_12
21.4
B_CELL_NAIVE_13
21.3
B_CELL_NAIVE_14
21.1
B_CELL_NAIVE_15
21.0
B_CELL_NAIVE_16
20.5
B_CELL_NAIVE_17
20.5
B_CELL_NAIVE_18
20.3
B_CELL_NAIVE_19
20.3
B_CELL_NAIVE_20
20.2
B_CELL_NAIVE_21
20.1
B_CELL_NAIVE_22
20.1
B_CELL_NAIVE_23
20.0
B_CELL_NAIVE_24
20.0
B_CELL_NAIVE_25
20.0
B_CELL_NAIVE_26
20.0
B_CELL_NAIVE_27
19.8
B_CELL_NAIVE_28
19.8
B_CELL_NAIVE_29
19.7
B_CELL_NAIVE_30
19.6
B_CELL_NAIVE_31
19.4
B_CELL_NAIVE_32
19.4
B_CELL_NAIVE_33
19.1
B_CELL_NAIVE_34
19.1
B_CELL_NAIVE_35
19.0
B_CELL_NAIVE_36
18.8
B_CELL_NAIVE_37
18.7
B_CELL_NAIVE_38
18.6
B_CELL_NAIVE_39
18.6
B_CELL_NAIVE_40
18.5
B_CELL_NAIVE_41
18.5
B_CELL_NAIVE_42
18.4
B_CELL_NAIVE_43
18.4
B_CELL_NAIVE_44
18.2
B_CELL_NAIVE_45
18.0
B_CELL_NAIVE_46
17.9
B_CELL_NAIVE_47
17.9
B_CELL_NAIVE_48
17.4
B_CELL_NAIVE_49
17.4
B_CELL_NAIVE_50
17.3
B_CELL_NAIVE_51
17.2
B_CELL_NAIVE_52
17.1
B_CELL_NAIVE_53
17.0
B_CELL_NAIVE_54
16.8
B_CELL_NAIVE_55
16.8
B_CELL_NAIVE_56
16.8
B_CELL_NAIVE_57
16.7
B_CELL_NAIVE_58
16.7
B_CELL_NAIVE_59
16.7
B_CELL_NAIVE_60
16.3
B_CELL_NAIVE_61
16.0
B_CELL_NAIVE_62
15.8
B_CELL_NAIVE_63
15.7
B_CELL_NAIVE_64
15.6
B_CELL_NAIVE_65
15.6
B_CELL_NAIVE_66
15.3
B_CELL_NAIVE_67
15.2
B_CELL_NAIVE_68
15.1
B_CELL_NAIVE_69
15.1
B_CELL_NAIVE_70
14.6
B_CELL_NAIVE_71
14.2
B_CELL_NAIVE_72
14.2
B_CELL_NAIVE_73
13.9
B_CELL_NAIVE_74
13.8
B_CELL_NAIVE_75
13.8
B_CELL_NAIVE_76
13.7
B_CELL_NAIVE_77
13.4
B_CELL_NAIVE_78
13.3
B_CELL_NAIVE_79
13.2
B_CELL_NAIVE_80
13.2
B_CELL_NAIVE_81
13.1
B_CELL_NAIVE_82
12.9
B_CELL_NAIVE_83
12.6
B_CELL_NAIVE_84
12.4
B_CELL_NAIVE_85
11.7
B_CELL_NAIVE_86
11.4
B_CELL_NAIVE_87
9.2
B_CELL_NAIVE_88
8.8
B_CELL_NAIVE_89
8.5
B_CELL_NAIVE_90
7.8
B_CELL_NAIVE_91
7.0
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