A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
62.1
nTPM
Monaco:
71.2
nTPM
Schmiedel:
22.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.1
HPA sample
nTPM
Classical monocyte nTPM: 53.2
Samples: 6
Max nTPM: 81.2
Min nTPM: 33.9
P10809_1003
33.9
P10809_1020
62.0
P10809_1039
81.2
P10809_1058
37.8
P10809_1080
48.7
P10809_1107
55.3
Intermediate monocyte nTPM: 57.5
Samples: 6
Max nTPM: 77.4
Min nTPM: 40.1
P10809_1004
40.1
P10809_1023
72.2
P10809_1042
68.6
P10809_1061
44.3
P10809_1081
42.2
P10809_1108
77.4
Non-classical monocyte nTPM: 62.1
Samples: 5
Max nTPM: 104.3
Min nTPM: 35.0
P10809_1005
42.8
P10809_1053
76.0
P10809_1072
104.3
P10809_1082
35.0
P10809_1109
52.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.2
Monaco sample
nTPM
Classical monocyte nTPM: 71.3
Samples: 4
Max nTPM: 92.9
Min nTPM: 49.8
RHH5313_R3680
59.9
RHH5221_R3593
92.9
RHH5250_R3622
82.4
RHH5279_R3651
49.8
Intermediate monocyte nTPM: 63.3
Samples: 4
Max nTPM: 89.0
Min nTPM: 40.4
RHH5314_R3681
47.6
RHH5222_R3594
40.4
RHH5251_R3623
76.2
RHH5280_R3652
89.0
Non-classical monocyte nTPM: 54.2
Samples: 4
Max nTPM: 68.8
Min nTPM: 29.4
RHH5315_R3682
51.5
RHH5223_R3595
29.4
RHH5252_R3624
68.8
RHH5281_R3653
67.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.8
Schmiedel sample id
TPM
Classical monocyte TPM: 21.9
Samples: 91
Max TPM: 29.8
Min TPM: 14.1
MONOCYTES_1
29.8
MONOCYTES_2
29.1
MONOCYTES_3
28.6
MONOCYTES_4
27.1
MONOCYTES_5
26.8
MONOCYTES_6
26.8
MONOCYTES_7
26.5
MONOCYTES_8
26.5
MONOCYTES_9
26.4
MONOCYTES_10
26.2
MONOCYTES_11
26.0
MONOCYTES_12
25.8
MONOCYTES_13
25.6
MONOCYTES_14
25.5
MONOCYTES_15
25.4
MONOCYTES_16
25.3
MONOCYTES_17
25.1
MONOCYTES_18
24.8
MONOCYTES_19
24.8
MONOCYTES_20
24.6
MONOCYTES_21
24.3
MONOCYTES_22
24.3
MONOCYTES_23
24.2
MONOCYTES_24
24.1
MONOCYTES_25
23.9
MONOCYTES_26
23.8
MONOCYTES_27
23.7
MONOCYTES_28
23.7
MONOCYTES_29
23.6
MONOCYTES_30
23.5
MONOCYTES_31
23.5
MONOCYTES_32
23.4
MONOCYTES_33
23.0
MONOCYTES_34
22.9
MONOCYTES_35
22.8
MONOCYTES_36
22.7
MONOCYTES_37
22.5
MONOCYTES_38
22.4
MONOCYTES_39
22.4
MONOCYTES_40
22.4
MONOCYTES_41
22.3
MONOCYTES_42
22.1
MONOCYTES_43
22.0
MONOCYTES_44
22.0
MONOCYTES_45
22.0
MONOCYTES_46
21.9
MONOCYTES_47
21.8
MONOCYTES_48
21.7
MONOCYTES_49
21.7
MONOCYTES_50
21.6
MONOCYTES_51
21.4
MONOCYTES_52
21.3
MONOCYTES_53
21.3
MONOCYTES_54
21.2
MONOCYTES_55
21.1
MONOCYTES_56
21.1
MONOCYTES_57
21.0
MONOCYTES_58
21.0
MONOCYTES_59
20.8
MONOCYTES_60
20.8
MONOCYTES_61
20.5
MONOCYTES_62
20.4
MONOCYTES_63
20.3
MONOCYTES_64
19.9
MONOCYTES_65
19.8
MONOCYTES_66
19.7
MONOCYTES_67
19.4
MONOCYTES_68
19.4
MONOCYTES_69
19.3
MONOCYTES_70
19.3
MONOCYTES_71
19.3
MONOCYTES_72
19.1
MONOCYTES_73
19.1
MONOCYTES_74
19.0
MONOCYTES_75
18.9
MONOCYTES_76
18.7
MONOCYTES_77
18.5
MONOCYTES_78
18.5
MONOCYTES_79
18.5
MONOCYTES_80
18.1
MONOCYTES_81
18.1
MONOCYTES_82
18.1
MONOCYTES_83
17.6
MONOCYTES_84
17.5
MONOCYTES_85
17.3
MONOCYTES_86
17.0
MONOCYTES_87
16.9
MONOCYTES_88
15.6
MONOCYTES_89
15.0
MONOCYTES_90
14.2
MONOCYTES_91
14.1
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Non-classical monocyte TPM: 22.8
Samples: 90
Max TPM: 32.8
Min TPM: 13.1
M2_1
32.8
M2_2
29.6
M2_3
28.6
M2_4
28.5
M2_5
28.4
M2_6
28.2
M2_7
28.1
M2_8
27.9
M2_9
27.8
M2_10
27.8
M2_11
27.8
M2_12
27.8
M2_13
27.7
M2_14
27.5
M2_15
27.1
M2_16
26.7
M2_17
26.4
M2_18
26.3
M2_19
26.3
M2_20
26.3
M2_21
25.9
M2_22
25.9
M2_23
25.7
M2_24
25.6
M2_25
25.4
M2_26
25.3
M2_27
25.3
M2_28
25.3
M2_29
25.1
M2_30
25.1
M2_31
25.0
M2_32
24.8
M2_33
24.7
M2_34
24.6
M2_35
24.6
M2_36
24.5
M2_37
24.4
M2_38
24.3
M2_39
24.2
M2_40
24.2
M2_41
24.0
M2_42
23.9
M2_43
23.9
M2_44
23.6
M2_45
23.4
M2_46
23.3
M2_47
23.0
M2_48
23.0
M2_49
23.0
M2_50
23.0
M2_51
22.3
M2_52
22.3
M2_53
22.2
M2_54
22.1
M2_55
22.0
M2_56
21.9
M2_57
21.8
M2_58
21.4
M2_59
21.4
M2_60
21.3
M2_61
21.0
M2_62
20.9
M2_63
20.8
M2_64
20.7
M2_65
20.7
M2_66
20.5
M2_67
20.4
M2_68
20.3
M2_69
20.3
M2_70
20.1
M2_71
19.9
M2_72
19.6
M2_73
19.4
M2_74
18.9
M2_75
18.9
M2_76
18.3
M2_77
18.1
M2_78
17.7
M2_79
17.7
M2_80
17.3
M2_81
17.2
M2_82
16.8
M2_83
16.5
M2_84
16.4
M2_85
16.4
M2_86
15.4
M2_87
15.1
M2_88
13.3
M2_89
13.2
M2_90
13.1
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