MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.0 nTPM
HPA Brain:16.0 nTPM
GTEx:0.0 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:0.6 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
2219 Male, age 76, both hemispheres 16.0
1830 Male, age 51, unknown 15.9
1833 Male, age 53, unknown 15.7
2828 Female, age 72, unknown 15.3
1827 Male, age 72, unknown 15.2
2411 Female, age 72, unknown 14.4
2666 Male, age 74, left hemisphere 13.9
2019 Male, age 18, unknown 13.2
2586 Male, age 75, left hemisphere 13.2
1870 Female, age 42, unknown 11.3
Dorsal raphe nucleus
nTPM: 14.5
2047 Male, age 72, unknown 16.8
2016 Female, age 72, unknown 14.6
2750 Male, age 76, both hemispheres 14.5
2298 Female, age 72, unknown 13.6
1828 Male, age 53, unknown 13.2
Inferior colliculus
nTPM: 15.5
2849 Male, age 72, unknown 16.8
1890 Male, age 53, unknown 15.5
1848 Female, age 42, unknown 14.9
2097 Female, age 72, unknown 14.7
Median raphe nucleus
nTPM: 14.4
2220 Male, age 76, midline 14.4
Periaquaductal grey, anterior
nTPM: 13.9
1947 Male, age 18, unknown 15.1
1795 Male, age 51, unknown 14.1
2502 Female, age 75, unknown 12.7
Periaquaductal grey, dorsal
nTPM: 15.5
2850 Male, age 76, both hemispheres 15.7
1840 Male, age 53, unknown 15.5
2464 Female, age 72, unknown 15.5
1831 Male, age 72, unknown 15.3
Periaquaductal grey, lateral
nTPM: 16.0
2140 Male, age 76, both hemispheres 17.5
2053 Male, age 18, unknown 15.2
2272 Male, age 74, both hemispheres 15.2
Pretectal area
nTPM: 14.6
2667 Female, age 75, unknown 16.3
2316 Male, age 76, right hemisphere 16.0
2273 Male, age 74, both hemispheres 15.8
2407 Male, age 75, both hemispheres 15.5
2825 Male, age 18, unknown 15.2
1944 Female, age 72, unknown 15.1
2224 Female, age 72, unknown 14.8
1816 Male, age 51, unknown 14.5
1815 Male, age 53, unknown 13.1
2007 Male, age 72, unknown 12.7
1817 Female, age 42, unknown 11.9
Red nucleus
nTPM: 14.4
2823 Male, age 76, right hemisphere 16.1
2584 Male, age 75, left hemisphere 15.7
1954 Female, age 42, unknown 15.3
1904 Male, age 53, unknown 15.2
2588 Male, age 74, left hemisphere 14.9
1865 Male, age 51, unknown 14.8
2725 Female, age 75, unknown 14.6
2503 Female, age 72, unknown 14.2
2785 Male, age 18, unknown 14.0
2227 Male, age 72, unknown 13.4
2769 Male, age 72, unknown 13.3
1821 Female, age 72, unknown 11.4
Substantia nigra
nTPM: 14.0
2409 Female, age 72, unknown 16.0
1941 Male, age 53, unknown 15.1
2590 Female, age 75, unknown 14.9
2241 Male, age 72, unknown 14.8
2583 Male, age 75, right hemisphere 14.8
2665 Male, age 74, both hemispheres 13.5
1889 Female, age 72, unknown 13.1
2699 Male, age 18, unknown 13.1
1916 Female, age 42, unknown 12.8
1851 Male, age 51, unknown 12.3
Superior colliculus
nTPM: 14.2
1895 Male, age 76, right hemisphere 16.0
2261 Male, age 18, unknown 15.6
2087 Female, age 72, unknown 15.5
2664 Male, age 75, both hemispheres 14.9
1796 Male, age 53, unknown 13.7
1839 Male, age 51, unknown 13.6
1913 Female, age 42, unknown 13.5
1995 Male, age 72, unknown 13.4
2587 Male, age 74, left hemisphere 13.1
2668 Female, age 75, unknown 12.8
Ventral tegmental area
nTPM: 14.0
2218 Male, age 76, both hemispheres 15.1
1942 Male, age 51, unknown 14.3
2021 Male, age 53, unknown 14.1
2410 Female, age 72, unknown 13.9
2223 Female, age 72, unknown 13.4
1915 Female, age 42, unknown 12.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.0
Samples: 183

Max nTPM: 1.0
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 0.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 0.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 0.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 0.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 0.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 0.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 0.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 0.1
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 0.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 0.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Female 1.2
Sample B Female 0.8
Sample C Male 0.9
Sample D Male 0.9
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 8.7
Min nTPM: 0.3
Sample A Female 8.7
Sample B Female 0.4
Sample C Male 2.8
Sample D Male 0.3
Periaqueductal gray
nTPM: 1.5
Samples: 3

Max nTPM: 2.2
Min nTPM: 0.7
Sample B Female 0.7
Sample C Male 1.5
Sample D Male 2.2
Superior colliculi
nTPM: 2.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.4
Sample C Male 5.5
Sample D Male 1.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Male 0.6
Sample B Male 0.9
Sample C Female 0.5
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
76081195 Antisense, RP_060608_04_B06, Mouse strain C57BL/6J (56 days, male) 0.4

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