MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.1 nTPM
HPA Brain:75.9 nTPM
GTEx:84.1 nTPM
FANTOM5:318.2 Scaled Tags Per Million
Pig:75.5 nTPM
Mouse:149.7 nTPM
Allen mouse:11.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.1
2411 Female, age 72, unknown 83.7
2019 Male, age 18, unknown 81.1
1870 Female, age 42, unknown 74.4
1833 Male, age 53, unknown 65.3
1830 Male, age 51, unknown 65.1
1827 Male, age 72, unknown 63.7
2219 Male, age 76, both hemispheres 59.5
2666 Male, age 74, left hemisphere 56.1
2828 Female, age 72, unknown 51.8
2586 Male, age 75, left hemisphere 50.5
Dorsal raphe nucleus
nTPM: 72.9
2298 Female, age 72, unknown 94.1
2750 Male, age 76, both hemispheres 80.1
2047 Male, age 72, unknown 66.0
1828 Male, age 53, unknown 62.6
2016 Female, age 72, unknown 61.5
Inferior colliculus
nTPM: 65.0
2097 Female, age 72, unknown 87.0
1890 Male, age 53, unknown 62.5
1848 Female, age 42, unknown 60.6
2849 Male, age 72, unknown 49.8
Median raphe nucleus
nTPM: 75.8
2220 Male, age 76, midline 75.8
Periaquaductal grey, anterior
nTPM: 72.0
1947 Male, age 18, unknown 89.0
2502 Female, age 75, unknown 68.1
1795 Male, age 51, unknown 59.1
Periaquaductal grey, dorsal
nTPM: 57.4
2464 Female, age 72, unknown 59.7
2850 Male, age 76, both hemispheres 58.5
1831 Male, age 72, unknown 58.2
1840 Male, age 53, unknown 53.4
Periaquaductal grey, lateral
nTPM: 58.6
2272 Male, age 74, both hemispheres 75.2
2053 Male, age 18, unknown 54.8
2140 Male, age 76, both hemispheres 45.8
Pretectal area
nTPM: 75.9
1817 Female, age 42, unknown 96.6
2007 Male, age 72, unknown 94.6
2273 Male, age 74, both hemispheres 85.6
1944 Female, age 72, unknown 84.3
1815 Male, age 53, unknown 84.0
1816 Male, age 51, unknown 83.5
2224 Female, age 72, unknown 74.7
2667 Female, age 75, unknown 74.0
2825 Male, age 18, unknown 55.4
2316 Male, age 76, right hemisphere 52.2
2407 Male, age 75, both hemispheres 50.2
Red nucleus
nTPM: 68.2
1821 Female, age 72, unknown 95.0
1865 Male, age 51, unknown 77.4
2785 Male, age 18, unknown 75.6
1954 Female, age 42, unknown 75.0
1904 Male, age 53, unknown 73.0
2725 Female, age 75, unknown 69.8
2227 Male, age 72, unknown 64.9
2769 Male, age 72, unknown 64.6
2503 Female, age 72, unknown 64.2
2823 Male, age 76, right hemisphere 62.7
2584 Male, age 75, left hemisphere 52.1
2588 Male, age 74, left hemisphere 44.6
Substantia nigra
nTPM: 75.2
1941 Male, age 53, unknown 94.6
1889 Female, age 72, unknown 88.5
2241 Male, age 72, unknown 87.7
1916 Female, age 42, unknown 82.1
2409 Female, age 72, unknown 82.1
1851 Male, age 51, unknown 81.9
2590 Female, age 75, unknown 62.8
2583 Male, age 75, right hemisphere 59.8
2665 Male, age 74, both hemispheres 57.0
2699 Male, age 18, unknown 55.4
Superior colliculus
nTPM: 66.4
2668 Female, age 75, unknown 77.7
2587 Male, age 74, left hemisphere 75.8
1895 Male, age 76, right hemisphere 72.3
2087 Female, age 72, unknown 70.2
1913 Female, age 42, unknown 69.1
2261 Male, age 18, unknown 68.9
1995 Male, age 72, unknown 64.6
1796 Male, age 53, unknown 59.0
1839 Male, age 51, unknown 58.1
2664 Male, age 75, both hemispheres 48.2
Ventral tegmental area
nTPM: 69.8
2410 Female, age 72, unknown 81.8
2218 Male, age 76, both hemispheres 72.0
2223 Female, age 72, unknown 70.2
1915 Female, age 42, unknown 69.6
1942 Male, age 51, unknown 64.8
2021 Male, age 53, unknown 60.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 84.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.1
Samples: 183

Max nTPM: 205.9
Min nTPM: 37.0
Std nTPM: 23.5
Median nTPM: 81.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 205.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 170.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 141.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 140.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 139.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 134.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 129.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 126.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 125.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 125.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 124.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 318.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 318.2
FF:10158-103A5 76 years, female 318.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.9
Samples: 4

Max nTPM: 96.8
Min nTPM: 45.7
Sample A Female 96.8
Sample B Female 66.6
Sample C Male 90.6
Sample D Male 45.7
Midbrain
nTPM: 70.9
Samples: 4

Max nTPM: 92.2
Min nTPM: 60.6
Sample A Female 60.6
Sample B Female 66.8
Sample C Male 92.2
Sample D Male 64.0
Periaqueductal gray
nTPM: 56.8
Samples: 3

Max nTPM: 69.6
Min nTPM: 50.0
Sample B Female 50.7
Sample C Male 69.6
Sample D Male 50.0
Superior colliculi
nTPM: 75.5
Samples: 4

Max nTPM: 89.1
Min nTPM: 63.2
Sample A Female 73.3
Sample B Female 76.3
Sample C Male 89.1
Sample D Male 63.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 149.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 149.7
Samples: 4

Max nTPM: 152.9
Min nTPM: 146.1
Sample A Male 150.6
Sample B Male 149.1
Sample C Female 146.1
Sample D Female 152.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.0
512774 Antisense, RP_040809_02_E02, Mouse strain C57BL/6J (56 days, male) 11.2
75651232 Antisense, RP_060518_01_D10, Mouse strain C57BL/6J (56 days, male) 10.9

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