A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
39.2
nTPM
Schmiedel:
51.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
NK-cell nTPM: 1.8
Samples: 6
Max nTPM: 3.0
Min nTPM: 0.4
P10809_1013
2.4
P10809_1033
1.6
P10809_1052
3.0
P10809_1071
0.4
P10809_1093
0.6
P10809_1103
2.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.2
Monaco sample
nTPM
NK-cell nTPM: 39.2
Samples: 4
Max nTPM: 57.3
Min nTPM: 23.1
RHH5316_R3683
35.8
RHH5224_R3596
23.1
RHH5253_R3625
57.3
RHH5282_R3654
40.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.4
Schmiedel sample id
TPM
NK-cell TPM: 51.4
Samples: 90
Max TPM: 71.4
Min TPM: 34.9
NK_1
71.4
NK_2
68.0
NK_3
67.2
NK_4
67.1
NK_5
65.9
NK_6
65.1
NK_7
62.8
NK_8
62.1
NK_9
60.2
NK_10
60.2
NK_11
59.7
NK_12
59.5
NK_13
59.4
NK_14
59.1
NK_15
58.7
NK_16
58.5
NK_17
58.5
NK_18
58.2
NK_19
57.4
NK_20
57.1
NK_21
57.1
NK_22
56.0
NK_23
55.7
NK_24
55.4
NK_25
55.3
NK_26
55.1
NK_27
55.0
NK_28
55.0
NK_29
55.0
NK_30
54.6
NK_31
54.4
NK_32
54.0
NK_33
53.5
NK_34
53.4
NK_35
52.7
NK_36
52.6
NK_37
52.4
NK_38
52.3
NK_39
52.0
NK_40
51.9
NK_41
51.5
NK_42
51.5
NK_43
51.3
NK_44
51.3
NK_45
51.1
NK_46
50.9
NK_47
50.8
NK_48
50.7
NK_49
50.7
NK_50
50.6
NK_51
50.5
NK_52
50.3
NK_53
50.2
NK_54
50.1
NK_55
50.0
NK_56
49.9
NK_57
49.4
NK_58
48.5
NK_59
48.1
NK_60
47.0
NK_61
46.9
NK_62
46.9
NK_63
46.9
NK_64
46.8
NK_65
46.8
NK_66
46.5
NK_67
46.4
NK_68
46.4
NK_69
46.3
NK_70
45.8
NK_71
45.5
NK_72
45.5
NK_73
44.6
NK_74
43.7
NK_75
43.7
NK_76
43.7
NK_77
43.5
NK_78
42.8
NK_79
42.6
NK_80
42.2
NK_81
42.0
NK_82
41.9
NK_83
41.6
NK_84
41.4
NK_85
41.1
NK_86
39.1
NK_87
38.6
NK_88
38.3
NK_89
36.6
NK_90
34.9
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