A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.8
nTPM
Monaco:
49.7
nTPM
Schmiedel:
54.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.8
HPA sample
nTPM
Classical monocyte nTPM: 2.6
Samples: 6
Max nTPM: 3.7
Min nTPM: 1.9
P10809_1003
1.9
P10809_1020
2.1
P10809_1039
3.7
P10809_1058
2.3
P10809_1080
2.8
P10809_1107
3.0
Intermediate monocyte nTPM: 3.9
Samples: 6
Max nTPM: 5.4
Min nTPM: 2.4
P10809_1004
5.2
P10809_1023
2.4
P10809_1042
3.4
P10809_1061
4.1
P10809_1081
3.1
P10809_1108
5.4
Non-classical monocyte nTPM: 4.9
Samples: 5
Max nTPM: 6.2
Min nTPM: 2.2
P10809_1005
5.9
P10809_1053
5.2
P10809_1072
2.2
P10809_1082
4.8
P10809_1109
6.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.7
Monaco sample
nTPM
Classical monocyte nTPM: 38.2
Samples: 4
Max nTPM: 73.4
Min nTPM: 23.1
RHH5313_R3680
23.1
RHH5221_R3593
73.4
RHH5250_R3622
28.6
RHH5279_R3651
27.6
Intermediate monocyte nTPM: 43.6
Samples: 4
Max nTPM: 72.2
Min nTPM: 29.8
RHH5314_R3681
29.8
RHH5222_R3594
72.2
RHH5251_R3623
38.2
RHH5280_R3652
34.2
Non-classical monocyte nTPM: 49.7
Samples: 4
Max nTPM: 66.3
Min nTPM: 36.4
RHH5315_R3682
39.6
RHH5223_R3595
66.3
RHH5252_R3624
56.6
RHH5281_R3653
36.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.5
Schmiedel sample id
TPM
Classical monocyte TPM: 31.7
Samples: 91
Max TPM: 40.5
Min TPM: 17.9
MONOCYTES_1
40.5
MONOCYTES_2
39.9
MONOCYTES_3
38.8
MONOCYTES_4
38.4
MONOCYTES_5
37.6
MONOCYTES_6
37.5
MONOCYTES_7
36.9
MONOCYTES_8
36.5
MONOCYTES_9
36.3
MONOCYTES_10
36.0
MONOCYTES_11
35.9
MONOCYTES_12
35.7
MONOCYTES_13
35.6
MONOCYTES_14
35.6
MONOCYTES_15
35.5
MONOCYTES_16
35.4
MONOCYTES_17
35.1
MONOCYTES_18
35.0
MONOCYTES_19
35.0
MONOCYTES_20
34.9
MONOCYTES_21
34.7
MONOCYTES_22
34.4
MONOCYTES_23
34.1
MONOCYTES_24
34.1
MONOCYTES_25
34.0
MONOCYTES_26
33.9
MONOCYTES_27
33.8
MONOCYTES_28
33.6
MONOCYTES_29
33.4
MONOCYTES_30
33.3
MONOCYTES_31
33.3
MONOCYTES_32
33.2
MONOCYTES_33
33.2
MONOCYTES_34
33.0
MONOCYTES_35
33.0
MONOCYTES_36
32.9
MONOCYTES_37
32.8
MONOCYTES_38
32.8
MONOCYTES_39
32.7
MONOCYTES_40
32.7
MONOCYTES_41
32.6
MONOCYTES_42
32.5
MONOCYTES_43
32.2
MONOCYTES_44
32.2
MONOCYTES_45
32.2
MONOCYTES_46
31.9
MONOCYTES_47
31.9
MONOCYTES_48
31.7
MONOCYTES_49
31.7
MONOCYTES_50
31.6
MONOCYTES_51
31.4
MONOCYTES_52
31.2
MONOCYTES_53
31.1
MONOCYTES_54
31.1
MONOCYTES_55
31.1
MONOCYTES_56
31.0
MONOCYTES_57
30.9
MONOCYTES_58
30.6
MONOCYTES_59
30.6
MONOCYTES_60
30.6
MONOCYTES_61
30.5
MONOCYTES_62
29.8
MONOCYTES_63
29.8
MONOCYTES_64
29.8
MONOCYTES_65
29.7
MONOCYTES_66
29.6
MONOCYTES_67
29.6
MONOCYTES_68
29.4
MONOCYTES_69
29.3
MONOCYTES_70
29.1
MONOCYTES_71
29.1
MONOCYTES_72
29.0
MONOCYTES_73
28.8
MONOCYTES_74
28.6
MONOCYTES_75
28.4
MONOCYTES_76
28.2
MONOCYTES_77
28.2
MONOCYTES_78
28.1
MONOCYTES_79
28.1
MONOCYTES_80
28.0
MONOCYTES_81
27.2
MONOCYTES_82
27.1
MONOCYTES_83
26.9
MONOCYTES_84
26.5
MONOCYTES_85
26.0
MONOCYTES_86
25.9
MONOCYTES_87
25.7
MONOCYTES_88
25.1
MONOCYTES_89
24.6
MONOCYTES_90
23.8
MONOCYTES_91
17.9
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Non-classical monocyte TPM: 54.5
Samples: 90
Max TPM: 72.3
Min TPM: 34.3
M2_1
72.3
M2_2
66.6
M2_3
65.0
M2_4
64.5
M2_5
64.4
M2_6
64.0
M2_7
63.5
M2_8
62.8
M2_9
62.7
M2_10
62.5
M2_11
61.9
M2_12
61.6
M2_13
61.3
M2_14
61.1
M2_15
60.8
M2_16
60.6
M2_17
60.5
M2_18
60.4
M2_19
59.9
M2_20
59.5
M2_21
59.5
M2_22
59.2
M2_23
59.0
M2_24
58.9
M2_25
58.8
M2_26
58.6
M2_27
58.5
M2_28
58.4
M2_29
58.3
M2_30
58.1
M2_31
57.7
M2_32
57.0
M2_33
56.9
M2_34
56.9
M2_35
56.4
M2_36
56.2
M2_37
56.0
M2_38
56.0
M2_39
55.9
M2_40
55.9
M2_41
55.7
M2_42
55.2
M2_43
55.2
M2_44
55.2
M2_45
55.1
M2_46
55.0
M2_47
55.0
M2_48
54.9
M2_49
54.6
M2_50
54.6
M2_51
54.4
M2_52
54.1
M2_53
54.0
M2_54
53.8
M2_55
53.4
M2_56
53.2
M2_57
52.6
M2_58
52.1
M2_59
52.0
M2_60
51.2
M2_61
51.1
M2_62
51.0
M2_63
51.0
M2_64
50.9
M2_65
50.8
M2_66
50.7
M2_67
50.7
M2_68
50.7
M2_69
50.1
M2_70
50.0
M2_71
49.8
M2_72
49.7
M2_73
49.6
M2_74
49.5
M2_75
49.0
M2_76
47.2
M2_77
47.2
M2_78
46.6
M2_79
46.4
M2_80
46.0
M2_81
45.9
M2_82
45.7
M2_83
45.2
M2_84
44.6
M2_85
43.7
M2_86
43.0
M2_87
41.7
M2_88
40.8
M2_89
38.9
M2_90
34.3
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