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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
78.4
nTPM
HPA Brain:
25.4
nTPM
GTEx:
78.4
nTPM
FANTOM5:
120.5
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
25.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 22.3
1870
Female, age 42, unknown
27.6
2019
Male, age 18, unknown
26.0
2586
Male, age 75, left hemisphere
25.4
2411
Female, age 72, unknown
24.1
1830
Male, age 51, unknown
22.2
1833
Male, age 53, unknown
21.2
2828
Female, age 72, unknown
20.6
1827
Male, age 72, unknown
20.1
2219
Male, age 76, both hemispheres
18.3
2666
Male, age 74, left hemisphere
17.4
Dorsal raphe nucleus nTPM: 25.4
2298
Female, age 72, unknown
28.4
2750
Male, age 76, both hemispheres
25.6
1828
Male, age 53, unknown
24.8
2016
Female, age 72, unknown
24.7
2047
Male, age 72, unknown
23.4
Inferior colliculus nTPM: 24.7
2097
Female, age 72, unknown
29.8
1848
Female, age 42, unknown
24.9
1890
Male, age 53, unknown
23.8
2849
Male, age 72, unknown
20.5
Median raphe nucleus nTPM: 24.1
2220
Male, age 76, midline
24.1
Periaquaductal grey, anterior nTPM: 23.9
2502
Female, age 75, unknown
25.8
1947
Male, age 18, unknown
24.4
1795
Male, age 51, unknown
21.6
Periaquaductal grey, dorsal nTPM: 21.0
2850
Male, age 76, both hemispheres
22.1
1840
Male, age 53, unknown
22.0
2464
Female, age 72, unknown
20.9
1831
Male, age 72, unknown
19.1
Periaquaductal grey, lateral nTPM: 22.0
2140
Male, age 76, both hemispheres
22.4
2053
Male, age 18, unknown
21.9
2272
Male, age 74, both hemispheres
21.7
Pretectal area nTPM: 23.2
1817
Female, age 42, unknown
26.0
2224
Female, age 72, unknown
25.3
2007
Male, age 72, unknown
25.2
2273
Male, age 74, both hemispheres
24.4
1816
Male, age 51, unknown
23.0
2667
Female, age 75, unknown
23.0
2316
Male, age 76, right hemisphere
22.8
1944
Female, age 72, unknown
22.7
1815
Male, age 53, unknown
22.4
2825
Male, age 18, unknown
21.1
2407
Male, age 75, both hemispheres
19.2
Red nucleus nTPM: 25.3
1821
Female, age 72, unknown
32.1
2503
Female, age 72, unknown
28.9
1865
Male, age 51, unknown
27.5
2769
Male, age 72, unknown
27.4
1904
Male, age 53, unknown
27.3
1954
Female, age 42, unknown
27.1
2227
Male, age 72, unknown
26.2
2785
Male, age 18, unknown
25.5
2823
Male, age 76, right hemisphere
23.4
2725
Female, age 75, unknown
21.4
2588
Male, age 74, left hemisphere
19.8
2584
Male, age 75, left hemisphere
16.6
Substantia nigra nTPM: 23.6
2241
Male, age 72, unknown
28.6
1941
Male, age 53, unknown
25.2
1851
Male, age 51, unknown
25.0
1889
Female, age 72, unknown
24.8
1916
Female, age 42, unknown
24.1
2590
Female, age 75, unknown
23.4
2583
Male, age 75, right hemisphere
22.2
2665
Male, age 74, both hemispheres
21.7
2699
Male, age 18, unknown
21.2
2409
Female, age 72, unknown
20.1
Superior colliculus nTPM: 22.2
1913
Female, age 42, unknown
24.0
2668
Female, age 75, unknown
24.0
2587
Male, age 74, left hemisphere
22.8
1995
Male, age 72, unknown
22.6
2087
Female, age 72, unknown
22.0
1839
Male, age 51, unknown
21.9
1895
Male, age 76, right hemisphere
21.9
2261
Male, age 18, unknown
21.9
1796
Male, age 53, unknown
21.8
2664
Male, age 75, both hemispheres
18.8
Ventral tegmental area nTPM: 23.7
2223
Female, age 72, unknown
25.9
1915
Female, age 42, unknown
25.3
2410
Female, age 72, unknown
23.8
2218
Male, age 76, both hemispheres
22.8
1942
Male, age 51, unknown
22.4
2021
Male, age 53, unknown
22.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
78.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 78.4
Samples: 139
Max nTPM: 132.3
Min nTPM: 42.7
Std nTPM: 16.3
Median nTPM: 75.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
132.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
130.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
119.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
118.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
109.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
109.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
108.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
107.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
107.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
107.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
107.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
104.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
103.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
101.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
99.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
99.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
97.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
97.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
97.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
96.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
96.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
94.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
94.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
94.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
93.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
93.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
92.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
91.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
91.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
89.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
89.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
88.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
88.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
87.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
87.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
87.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
87.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
87.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
85.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
85.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
85.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
85.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
84.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
83.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
83.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
83.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
83.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
83.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
82.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
81.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
81.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
80.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
79.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
79.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
79.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
79.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
79.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
78.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
78.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
77.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
77.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
77.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
75.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
75.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
75.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
75.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
75.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
75.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
75.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
75.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
75.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
74.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
74.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
74.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
73.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
73.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
73.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
73.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
73.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
73.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
72.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
72.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
72.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
72.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
72.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
72.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
72.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
72.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
71.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
71.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
71.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
71.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
71.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
70.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
70.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
70.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
70.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
70.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
69.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
69.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
69.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
68.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
68.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
68.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
67.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
67.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
67.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
67.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
66.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
66.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
66.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
66.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
66.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
65.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
65.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
65.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
65.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
64.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
61.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
61.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
61.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
60.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
60.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
60.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
59.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
57.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
57.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
57.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
56.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
56.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
56.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
54.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
53.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
53.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
53.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
52.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
51.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
51.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
42.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.