A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
17.9
nTPM
Schmiedel:
49.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
NK-cell nTPM: 4.0
Samples: 6
Max nTPM: 14.2
Min nTPM: 0.0
P10809_1013
1.6
P10809_1033
1.9
P10809_1052
1.5
P10809_1071
4.7
P10809_1093
14.2
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.9
Monaco sample
nTPM
NK-cell nTPM: 17.9
Samples: 4
Max nTPM: 22.6
Min nTPM: 10.2
RHH5316_R3683
16.9
RHH5224_R3596
10.2
RHH5253_R3625
22.6
RHH5282_R3654
22.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.2
Schmiedel sample id
TPM
NK-cell TPM: 49.2
Samples: 90
Max TPM: 78.2
Min TPM: 25.9
NK_1
78.2
NK_2
73.7
NK_3
72.8
NK_4
72.7
NK_5
72.4
NK_6
69.4
NK_7
67.9
NK_8
65.7
NK_9
65.6
NK_10
65.1
NK_11
64.4
NK_12
63.2
NK_13
62.6
NK_14
61.4
NK_15
60.7
NK_16
60.1
NK_17
59.0
NK_18
58.9
NK_19
58.8
NK_20
58.6
NK_21
58.3
NK_22
57.5
NK_23
57.0
NK_24
56.9
NK_25
56.5
NK_26
56.1
NK_27
55.3
NK_28
55.0
NK_29
54.9
NK_30
54.7
NK_31
54.6
NK_32
54.3
NK_33
54.0
NK_34
52.4
NK_35
52.1
NK_36
52.1
NK_37
51.9
NK_38
51.8
NK_39
51.5
NK_40
50.8
NK_41
50.5
NK_42
50.2
NK_43
49.8
NK_44
49.5
NK_45
48.5
NK_46
47.0
NK_47
46.9
NK_48
46.8
NK_49
46.5
NK_50
46.4
NK_51
46.3
NK_52
46.3
NK_53
46.1
NK_54
45.7
NK_55
45.3
NK_56
45.3
NK_57
44.8
NK_58
43.1
NK_59
42.9
NK_60
42.8
NK_61
42.6
NK_62
42.3
NK_63
41.7
NK_64
41.5
NK_65
41.5
NK_66
41.0
NK_67
40.7
NK_68
40.4
NK_69
40.2
NK_70
38.8
NK_71
38.7
NK_72
38.2
NK_73
37.6
NK_74
37.5
NK_75
37.3
NK_76
37.2
NK_77
37.0
NK_78
36.1
NK_79
35.3
NK_80
35.3
NK_81
34.4
NK_82
34.4
NK_83
34.1
NK_84
33.5
NK_85
31.4
NK_86
31.4
NK_87
31.3
NK_88
30.3
NK_89
29.4
NK_90
25.9
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