A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.4
nTPM
Monaco:
18.1
nTPM
Schmiedel:
83.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.4
HPA sample
nTPM
Memory B-cell nTPM: 11.4
Samples: 6
Max nTPM: 55.5
Min nTPM: 1.6
P10809_1017
1.9
P10809_1025
3.4
P10809_1044
55.5
P10809_1063
1.6
P10809_1092
2.2
P10809_1105
3.9
Naive B-cell nTPM: 5.2
Samples: 6
Max nTPM: 14.8
Min nTPM: 2.3
P10809_1011
2.3
P10809_1029
3.1
P10809_1048
14.8
P10809_1067
2.8
P10809_1091
4.8
P10809_1104
3.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.9
Samples: 4
Max nTPM: 24.4
Min nTPM: 5.9
RHH5310_R3677
5.9
RHH5218_R3590
13.4
RHH5247_R3619
11.7
RHH5276_R3648
24.4
Naive B-cell nTPM: 16.5
Samples: 4
Max nTPM: 22.7
Min nTPM: 6.9
RHH5308_R3675
16.2
RHH5216_R3588
6.9
RHH5245_R3617
22.7
RHH5274_R3646
20.3
Non-switched memory B-cell nTPM: 18.1
Samples: 4
Max nTPM: 24.0
Min nTPM: 9.7
RHH5309_R3676
9.7
RHH5217_R3589
18.6
RHH5246_R3618
20.0
RHH5275_R3647
24.0
Plasmablast nTPM: 7.3
Samples: 4
Max nTPM: 12.5
Min nTPM: 2.6
RHH5312_R3679
2.6
RHH5220_R3592
5.0
RHH5249_R3621
9.1
RHH5278_R3650
12.5
Switched memory B-cell nTPM: 14.1
Samples: 4
Max nTPM: 25.3
Min nTPM: 4.8
RHH5311_R3678
4.8
RHH5219_R3591
19.1
RHH5248_R3620
7.1
RHH5277_R3649
25.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.0
Schmiedel sample id
TPM
Naive B-cell TPM: 83.0
Samples: 91
Max TPM: 139.7
Min TPM: 42.1
B_CELL_NAIVE_1
139.7
B_CELL_NAIVE_2
118.9
B_CELL_NAIVE_3
114.8
B_CELL_NAIVE_4
107.8
B_CELL_NAIVE_5
105.6
B_CELL_NAIVE_6
104.7
B_CELL_NAIVE_7
104.7
B_CELL_NAIVE_8
102.8
B_CELL_NAIVE_9
102.5
B_CELL_NAIVE_10
101.9
B_CELL_NAIVE_11
101.5
B_CELL_NAIVE_12
99.2
B_CELL_NAIVE_13
96.7
B_CELL_NAIVE_14
96.7
B_CELL_NAIVE_15
96.5
B_CELL_NAIVE_16
94.5
B_CELL_NAIVE_17
94.0
B_CELL_NAIVE_18
92.7
B_CELL_NAIVE_19
92.2
B_CELL_NAIVE_20
91.8
B_CELL_NAIVE_21
91.3
B_CELL_NAIVE_22
91.1
B_CELL_NAIVE_23
91.1
B_CELL_NAIVE_24
90.8
B_CELL_NAIVE_25
90.6
B_CELL_NAIVE_26
90.4
B_CELL_NAIVE_27
89.5
B_CELL_NAIVE_28
89.5
B_CELL_NAIVE_29
88.2
B_CELL_NAIVE_30
87.0
B_CELL_NAIVE_31
86.7
B_CELL_NAIVE_32
86.0
B_CELL_NAIVE_33
84.8
B_CELL_NAIVE_34
84.3
B_CELL_NAIVE_35
84.2
B_CELL_NAIVE_36
83.9
B_CELL_NAIVE_37
83.8
B_CELL_NAIVE_38
83.6
B_CELL_NAIVE_39
83.5
B_CELL_NAIVE_40
83.4
B_CELL_NAIVE_41
82.0
B_CELL_NAIVE_42
82.0
B_CELL_NAIVE_43
81.6
B_CELL_NAIVE_44
81.5
B_CELL_NAIVE_45
81.4
B_CELL_NAIVE_46
81.4
B_CELL_NAIVE_47
80.9
B_CELL_NAIVE_48
80.8
B_CELL_NAIVE_49
80.7
B_CELL_NAIVE_50
80.2
B_CELL_NAIVE_51
80.0
B_CELL_NAIVE_52
79.8
B_CELL_NAIVE_53
79.5
B_CELL_NAIVE_54
79.1
B_CELL_NAIVE_55
78.6
B_CELL_NAIVE_56
78.6
B_CELL_NAIVE_57
78.6
B_CELL_NAIVE_58
78.1
B_CELL_NAIVE_59
77.8
B_CELL_NAIVE_60
77.5
B_CELL_NAIVE_61
77.5
B_CELL_NAIVE_62
77.5
B_CELL_NAIVE_63
76.7
B_CELL_NAIVE_64
76.3
B_CELL_NAIVE_65
76.1
B_CELL_NAIVE_66
76.0
B_CELL_NAIVE_67
75.8
B_CELL_NAIVE_68
73.6
B_CELL_NAIVE_69
73.5
B_CELL_NAIVE_70
73.2
B_CELL_NAIVE_71
73.2
B_CELL_NAIVE_72
73.0
B_CELL_NAIVE_73
73.0
B_CELL_NAIVE_74
72.6
B_CELL_NAIVE_75
72.0
B_CELL_NAIVE_76
70.4
B_CELL_NAIVE_77
70.0
B_CELL_NAIVE_78
68.7
B_CELL_NAIVE_79
68.6
B_CELL_NAIVE_80
68.3
B_CELL_NAIVE_81
67.2
B_CELL_NAIVE_82
66.5
B_CELL_NAIVE_83
66.3
B_CELL_NAIVE_84
65.7
B_CELL_NAIVE_85
65.0
B_CELL_NAIVE_86
64.3
B_CELL_NAIVE_87
64.1
B_CELL_NAIVE_88
62.5
B_CELL_NAIVE_89
60.9
B_CELL_NAIVE_90
56.3
B_CELL_NAIVE_91
42.1
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The Human Protein Atlas project is funded
