A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.6
nTPM
Monaco:
22.4
nTPM
Schmiedel:
40.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
HPA sample
nTPM
Classical monocyte nTPM: 2.5
Samples: 6
Max nTPM: 6.3
Min nTPM: 0.7
P10809_1003
0.7
P10809_1020
2.2
P10809_1039
6.3
P10809_1058
2.2
P10809_1080
1.9
P10809_1107
1.9
Intermediate monocyte nTPM: 2.6
Samples: 6
Max nTPM: 4.3
Min nTPM: 1.2
P10809_1004
1.6
P10809_1023
2.5
P10809_1042
4.3
P10809_1061
1.2
P10809_1081
2.7
P10809_1108
3.4
Non-classical monocyte nTPM: 2.3
Samples: 5
Max nTPM: 4.0
Min nTPM: 0.4
P10809_1005
1.0
P10809_1053
3.1
P10809_1072
0.4
P10809_1082
4.0
P10809_1109
3.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.4
Monaco sample
nTPM
Classical monocyte nTPM: 15.6
Samples: 4
Max nTPM: 19.4
Min nTPM: 8.5
RHH5313_R3680
8.5
RHH5221_R3593
16.3
RHH5250_R3622
19.4
RHH5279_R3651
18.1
Intermediate monocyte nTPM: 22.4
Samples: 4
Max nTPM: 32.5
Min nTPM: 16.1
RHH5314_R3681
18.4
RHH5222_R3594
32.5
RHH5251_R3623
22.7
RHH5280_R3652
16.1
Non-classical monocyte nTPM: 12.2
Samples: 4
Max nTPM: 15.5
Min nTPM: 9.5
RHH5315_R3682
9.5
RHH5223_R3595
12.9
RHH5252_R3624
15.5
RHH5281_R3653
10.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.2
Schmiedel sample id
TPM
Classical monocyte TPM: 23.4
Samples: 91
Max TPM: 35.9
Min TPM: 15.5
MONOCYTES_1
35.9
MONOCYTES_2
35.5
MONOCYTES_3
34.0
MONOCYTES_4
30.7
MONOCYTES_5
30.4
MONOCYTES_6
29.6
MONOCYTES_7
29.4
MONOCYTES_8
29.1
MONOCYTES_9
28.6
MONOCYTES_10
28.6
MONOCYTES_11
28.5
MONOCYTES_12
28.5
MONOCYTES_13
28.4
MONOCYTES_14
28.2
MONOCYTES_15
28.1
MONOCYTES_16
27.9
MONOCYTES_17
27.2
MONOCYTES_18
27.0
MONOCYTES_19
26.3
MONOCYTES_20
25.9
MONOCYTES_21
25.5
MONOCYTES_22
25.5
MONOCYTES_23
25.5
MONOCYTES_24
25.4
MONOCYTES_25
25.4
MONOCYTES_26
25.3
MONOCYTES_27
25.2
MONOCYTES_28
25.2
MONOCYTES_29
25.0
MONOCYTES_30
24.8
MONOCYTES_31
24.7
MONOCYTES_32
24.2
MONOCYTES_33
24.2
MONOCYTES_34
24.2
MONOCYTES_35
24.1
MONOCYTES_36
24.0
MONOCYTES_37
23.9
MONOCYTES_38
23.9
MONOCYTES_39
23.9
MONOCYTES_40
23.7
MONOCYTES_41
23.5
MONOCYTES_42
23.4
MONOCYTES_43
23.2
MONOCYTES_44
23.2
MONOCYTES_45
23.1
MONOCYTES_46
22.9
MONOCYTES_47
22.7
MONOCYTES_48
22.6
MONOCYTES_49
22.6
MONOCYTES_50
22.5
MONOCYTES_51
22.2
MONOCYTES_52
22.1
MONOCYTES_53
22.1
MONOCYTES_54
21.9
MONOCYTES_55
21.8
MONOCYTES_56
21.6
MONOCYTES_57
21.6
MONOCYTES_58
21.6
MONOCYTES_59
21.5
MONOCYTES_60
21.5
MONOCYTES_61
21.4
MONOCYTES_62
21.4
MONOCYTES_63
21.2
MONOCYTES_64
21.2
MONOCYTES_65
21.1
MONOCYTES_66
21.0
MONOCYTES_67
21.0
MONOCYTES_68
20.5
MONOCYTES_69
20.4
MONOCYTES_70
20.4
MONOCYTES_71
20.3
MONOCYTES_72
20.2
MONOCYTES_73
20.0
MONOCYTES_74
19.8
MONOCYTES_75
19.6
MONOCYTES_76
19.5
MONOCYTES_77
19.4
MONOCYTES_78
19.4
MONOCYTES_79
19.0
MONOCYTES_80
19.0
MONOCYTES_81
18.9
MONOCYTES_82
18.6
MONOCYTES_83
18.1
MONOCYTES_84
18.1
MONOCYTES_85
18.1
MONOCYTES_86
17.9
MONOCYTES_87
17.8
MONOCYTES_88
17.5
MONOCYTES_89
17.3
MONOCYTES_90
17.0
MONOCYTES_91
15.5
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Non-classical monocyte TPM: 40.2
Samples: 90
Max TPM: 56.4
Min TPM: 27.2
M2_1
56.4
M2_2
56.0
M2_3
54.4
M2_4
54.3
M2_5
52.8
M2_6
51.5
M2_7
50.2
M2_8
49.4
M2_9
49.4
M2_10
49.1
M2_11
48.9
M2_12
48.0
M2_13
47.6
M2_14
47.4
M2_15
47.0
M2_16
46.4
M2_17
46.0
M2_18
45.9
M2_19
45.9
M2_20
45.8
M2_21
45.7
M2_22
44.6
M2_23
44.5
M2_24
44.2
M2_25
44.1
M2_26
44.1
M2_27
43.9
M2_28
43.7
M2_29
43.2
M2_30
43.2
M2_31
42.9
M2_32
42.7
M2_33
42.6
M2_34
42.4
M2_35
42.2
M2_36
41.4
M2_37
41.3
M2_38
41.2
M2_39
40.7
M2_40
40.4
M2_41
40.4
M2_42
40.0
M2_43
39.5
M2_44
39.5
M2_45
39.1
M2_46
39.0
M2_47
38.9
M2_48
38.9
M2_49
38.9
M2_50
38.7
M2_51
38.7
M2_52
38.6
M2_53
38.3
M2_54
37.9
M2_55
37.8
M2_56
37.6
M2_57
37.5
M2_58
37.5
M2_59
36.9
M2_60
36.9
M2_61
36.6
M2_62
36.5
M2_63
36.5
M2_64
36.4
M2_65
35.8
M2_66
35.5
M2_67
35.3
M2_68
35.1
M2_69
35.0
M2_70
35.0
M2_71
34.9
M2_72
34.9
M2_73
34.8
M2_74
34.5
M2_75
34.3
M2_76
33.9
M2_77
33.7
M2_78
33.1
M2_79
32.9
M2_80
32.6
M2_81
32.6
M2_82
32.4
M2_83
32.0
M2_84
30.7
M2_85
30.3
M2_86
29.7
M2_87
29.2
M2_88
29.0
M2_89
27.8
M2_90
27.2
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