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  • DAAM2
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:105.8 nTPM
HPA Brain:269.0 nTPM
GTEx:105.8 nTPM
FANTOM5:142.2 Scaled Tags Per Million
Pig:79.7 nTPM
Mouse:8.8 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.0
Sample id Sample description nTPM
Amygdala
nTPM: 203.9
2695 Female, age 67, right hemisphere 337.4
2814 Male, age 76, right hemisphere 229.4
2517 Female, age 94, left hemisphere 156.2
1987 Female, age 91, left hemisphere 155.8
2514 Male, age 75, right hemisphere 140.7
Basal amygdala
nTPM: 191.9
2827 Female, age 67, right hemisphere 365.2
2609 Male, age 75, right hemisphere 189.4
2685 Female, age 94, left hemisphere 181.4
1955 Male, age 76, both hemispheres 152.8
2110 Male, age 80, left hemisphere 148.2
2243 Female, age 91, right hemisphere 114.1
Central amygdala
nTPM: 240.0
2826 Female, age 94, left hemisphere 471.6
1905 Male, age 76, both hemispheres 211.7
2515 Male, age 75, right hemisphere 195.0
2701 Female, age 91, right hemisphere 165.7
2239 Male, age 80, left hemisphere 156.1
Corticomedial amygdala
nTPM: 126.9
2535 Female, age 67, right hemisphere 198.7
2428 Male, age 75, right hemisphere 154.9
2240 Male, age 76, both hemispheres 115.3
2829 Male, age 80, left hemisphere 112.9
2429 Female, age 94, left hemisphere 96.8
2242 Female, age 91, right hemisphere 82.8
Lateral amygdala
nTPM: 269.0
2830 Female, age 67, right hemisphere 486.7
2516 Male, age 75, right hemisphere 286.0
2534 Female, age 94, left hemisphere 261.4
2256 Male, age 80, left hemisphere 224.8
1883 Male, age 76, both hemispheres 188.2
2255 Female, age 91, right hemisphere 166.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 105.8
Samples: 181

Max nTPM: 465.6
Min nTPM: 8.6
Std nTPM: 66.6
Median nTPM: 87.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 465.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 349.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 319.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 308.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 267.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 264.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 263.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 252.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 249.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 229.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 219.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 206.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 203.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 202.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 201.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 196.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 196.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 193.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 192.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 190.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 188.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 187.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 180.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 177.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 172.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 169.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 162.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 160.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 159.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 157.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 157.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 154.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 153.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 150.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 149.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 149.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 148.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 147.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 146.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 145.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 141.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 137.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 137.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 134.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 132.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 131.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 131.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 131.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 128.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 127.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 123.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 122.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 122.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 121.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 121.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 121.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 121.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 121.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 118.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 117.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 117.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 116.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 116.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 114.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 113.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 110.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 110.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 106.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 104.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 102.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 100.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 99.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 99.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 97.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 96.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 95.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 94.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 94.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 93.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 91.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 90.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 89.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 89.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 88.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 87.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 87.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 87.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 86.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 84.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 83.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 82.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 82.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 80.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 78.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 77.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 77.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 76.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 74.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 74.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 73.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 73.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 72.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 72.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 71.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 70.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 70.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 70.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 70.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 68.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 68.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 67.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 67.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 66.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 66.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 66.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 66.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 65.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 64.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 64.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 64.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 64.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 63.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 62.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 62.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 62.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 61.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 60.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 60.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 58.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 58.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 58.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 58.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 57.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 57.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 57.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 56.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 56.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 54.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 54.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 53.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 53.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 52.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 52.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 52.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 51.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 50.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 48.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 47.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 47.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 46.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 43.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 43.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 43.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 41.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 40.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 40.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 40.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 39.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 38.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 38.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 38.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 37.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 36.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 35.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 33.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 27.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 23.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 21.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 16.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 8.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 142.2
FF:10151-102I7 76 years, female 142.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
Pig sample Sample description nTPM
Amygdala
nTPM: 79.7
Samples: 4

Max nTPM: 110.8
Min nTPM: 61.8
Sample A Female 64.9
Sample B Female 110.8
Sample C Male 81.1
Sample D Male 61.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 7.3
Sample A Male 7.6
Sample B Male 8.4
Sample C Female 12.0
Sample D Female 7.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.6
74511880 Antisense, RP_051121_04_A01, Mouse strain C57BL/6J (56 days, male) 6.2
68667288 Antisense, RP_050201_02_A02, Mouse strain C57BL/6J (56 days, male) 3.1

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