We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DAAM2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • DAAM2
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:145.9 nTPM
HPA Brain:305.9 nTPM
GTEx:145.9 nTPM
FANTOM5:294.1 Scaled Tags Per Million
Pig:179.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 263.0
2048 Male, age 55, midline 310.9
1981 Female, age 72, midline 270.2
2816 Male, age 47, midline 251.1
2194 Female, age 79, both hemispheres 244.7
2565 Male, age 75, midline 238.1
Cervical spinal cord, dorsal horn
nTPM: 230.7
2173 Female, age 72, unknown 301.5
2296 Male, age 66, both hemispheres 281.5
1877 Male, age 55, unknown 244.5
2069 Male, age 47, both hemispheres 210.7
2721 Male, age 90, both hemispheres 196.2
2297 Male, age 75, both hemispheres 149.6
Cervical spinal cord, ventral horn
nTPM: 305.9
2809 Male, age 90, both hemispheres 384.1
2295 Male, age 66, both hemispheres 337.1
2480 Male, age 75, both hemispheres 325.6
2098 Female, age 72, unknown 285.2
2068 Male, age 55, unknown 265.6
2820 Female, age 79, both hemispheres 237.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 145.9
Samples: 204

Max nTPM: 327.7
Min nTPM: 37.8
Std nTPM: 49.5
Median nTPM: 146.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 327.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 327.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 293.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 256.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 246.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 239.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 238.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 237.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 235.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 234.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 226.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 226.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 226.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 223.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 219.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 218.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 217.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 213.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 211.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 211.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 210.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 209.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 208.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 207.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 205.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 202.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 200.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 196.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 190.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 190.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 189.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 189.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 188.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 183.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 182.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 182.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 180.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 179.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 177.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 176.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 175.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 174.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 174.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 174.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 173.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 173.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 173.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 173.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 172.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 172.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 172.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 171.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 170.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 170.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 169.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 169.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 166.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 166.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 165.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 165.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 165.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 165.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 164.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 164.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 164.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 163.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 163.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 162.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 161.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 161.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 160.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 160.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 158.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 158.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 158.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 158.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 156.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 156.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 156.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 155.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 153.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 153.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 150.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 150.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 150.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 150.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 149.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 149.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 148.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 148.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 148.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 147.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 147.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 147.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 147.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 147.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 147.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 146.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 146.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 146.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 145.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 145.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 145.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 144.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 144.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 143.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 143.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 142.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 142.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 141.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 141.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 140.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 138.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 138.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 137.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 136.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 136.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 135.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 135.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 135.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 134.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 134.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 133.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 133.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 133.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 132.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 132.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 131.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 131.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 129.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 128.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 128.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 128.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 126.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 126.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 126.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 125.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 125.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 124.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 124.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 123.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 121.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 121.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 120.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 120.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 119.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 118.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 118.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 117.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 115.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 113.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 113.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 111.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 110.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 108.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 106.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 106.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 105.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 105.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 101.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 100.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 100.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 100.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 99.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 99.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 97.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 95.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 94.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 91.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 89.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 88.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 87.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 87.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 86.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 80.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 78.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 77.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 74.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 72.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 72.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 71.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 71.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 71.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 67.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 67.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 67.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 66.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 64.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 62.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 57.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 45.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 41.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 39.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 39.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 37.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

294.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 294.1
FF:10181-103D1 60 years, female 344.4
FF:10159-103A6 76 years, female 243.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 157.1
Samples: 4

Max nTPM: 175.2
Min nTPM: 111.4
Sample A Female 170.0
Sample B Female 171.8
Sample C Male 111.4
Sample D Male 175.2
Ventral spinal cord
nTPM: 179.6
Samples: 4

Max nTPM: 200.9
Min nTPM: 149.3
Sample A Female 189.7
Sample B Female 178.5
Sample C Male 149.3
Sample D Male 200.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo