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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • DAAM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:81.3 nTPM
FANTOM5:90.7 Scaled Tags Per Million
Pig:67.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051300Antibody HPA054630
Glial cells MediumMedium
Neuronal cells -Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 81.3
Samples: 300

Max nTPM: 357.5
Min nTPM: 14.8
Std nTPM: 47.9
Median nTPM: 67.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 357.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 272.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 262.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 231.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 228.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 214.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 205.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 204.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 199.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 188.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 187.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 182.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 178.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 174.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 173.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 168.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 164.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 162.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 162.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 161.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 157.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 157.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 157.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 157.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 153.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 150.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 150.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 149.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 147.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 146.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 146.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 143.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 141.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 139.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 136.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 135.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 135.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 133.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 133.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 130.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 129.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 129.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 127.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 127.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 125.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 125.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 125.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 124.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 122.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 121.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 119.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 119.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 116.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 116.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 115.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 115.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 115.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 114.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 114.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 113.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 113.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 110.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 109.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 109.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 109.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 108.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 108.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 108.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 108.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 107.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 107.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 106.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 105.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 105.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 104.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 104.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 104.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 103.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 103.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 103.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 102.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 102.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 101.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 100.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 99.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 99.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 99.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 99.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 98.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 96.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 96.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 96.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 94.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 93.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 92.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 92.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 91.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 91.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 90.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 90.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 89.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 88.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 88.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 88.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 87.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 87.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 86.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 86.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 86.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 86.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 86.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 85.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 85.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 85.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 85.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 84.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 84.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 81.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 81.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 80.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 80.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 79.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 78.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 78.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 78.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 78.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 78.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 78.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 78.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 76.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 76.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 76.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 75.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 75.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 74.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 74.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 72.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 72.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 71.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 71.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 71.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 70.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 70.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 70.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 69.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 69.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 69.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 69.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 67.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 67.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 67.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 67.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 66.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 66.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 66.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 66.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 66.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 65.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 65.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 65.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 65.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 65.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 65.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 64.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 63.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 63.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 63.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 63.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 63.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 63.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 63.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 62.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 62.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 61.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 61.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 61.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 61.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 60.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 60.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 60.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 59.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 59.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 59.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 59.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 59.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 59.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 58.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 58.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 58.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 58.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 58.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 57.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 56.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 56.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 55.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 55.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 55.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 55.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 55.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 55.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 54.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 54.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 54.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 53.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 53.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 53.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 52.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 52.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 51.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 50.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 49.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 49.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 49.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 49.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 48.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 48.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 48.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 48.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 47.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 47.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 47.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 47.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 47.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 47.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 47.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 46.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 46.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 46.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 46.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 46.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 46.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 45.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 45.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 45.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 45.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 45.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 44.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 44.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 44.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 43.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 43.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 43.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 43.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 43.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 42.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 42.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 42.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 41.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 41.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 39.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 39.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 38.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 38.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 38.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 38.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 38.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 37.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 37.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 37.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 37.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 36.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 36.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 36.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 36.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 35.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 35.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 34.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 34.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 34.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 34.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 34.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 34.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 32.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 32.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 32.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 32.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 31.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 31.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 31.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 30.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 29.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 28.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 26.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 26.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 25.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 25.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 25.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 25.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 24.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 24.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 24.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 23.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 23.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 21.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 19.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 19.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 18.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 16.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 14.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 90.7
FF:10164-103B2 76 years, female 90.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.8
Pig sample Sample description nTPM
Caudate
nTPM: 67.8
Samples: 4

Max nTPM: 75.7
Min nTPM: 58.0
Sample A Female 58.0
Sample B Female 63.6
Sample C Male 75.7
Sample D Male 73.9

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