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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2.1 nTPM
HPA Brain:34.7 nTPM
GTEx:2.1 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:34.3 nTPM
Mouse:32.3 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.7
Sample id Sample description nTPM
Amygdala
nTPM: 34.7
2695 Female, age 67, right hemisphere 59.0
2814 Male, age 76, right hemisphere 55.6
2517 Female, age 94, left hemisphere 28.9
2514 Male, age 75, right hemisphere 17.6
1987 Female, age 91, left hemisphere 12.4
Basal amygdala
nTPM: 32.9
2243 Female, age 91, right hemisphere 42.9
1955 Male, age 76, both hemispheres 34.8
2685 Female, age 94, left hemisphere 33.2
2609 Male, age 75, right hemisphere 29.2
2110 Male, age 80, left hemisphere 29.1
2827 Female, age 67, right hemisphere 28.4
Central amygdala
nTPM: 27.0
1905 Male, age 76, both hemispheres 39.1
2826 Female, age 94, left hemisphere 35.2
2239 Male, age 80, left hemisphere 25.7
2701 Female, age 91, right hemisphere 17.7
2515 Male, age 75, right hemisphere 17.3
Corticomedial amygdala
nTPM: 29.6
2429 Female, age 94, left hemisphere 39.4
2240 Male, age 76, both hemispheres 38.9
2829 Male, age 80, left hemisphere 31.2
2535 Female, age 67, right hemisphere 30.2
2242 Female, age 91, right hemisphere 19.3
2428 Male, age 75, right hemisphere 18.8
Lateral amygdala
nTPM: 27.1
2534 Female, age 94, left hemisphere 35.4
2516 Male, age 75, right hemisphere 33.0
2830 Female, age 67, right hemisphere 29.4
1883 Male, age 76, both hemispheres 25.6
2256 Male, age 80, left hemisphere 21.5
2255 Female, age 91, right hemisphere 17.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2.1
Samples: 181

Max nTPM: 7.2
Min nTPM: 0.1
Std nTPM: 1.3
Median nTPM: 1.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 7.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 6.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 6.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 6.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 5.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 5.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 4.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 4.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 4.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 4.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 4.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 4.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 4.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 4.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 4.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 4.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 4.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 3.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 3.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 3.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 3.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 3.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 3.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 3.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 3.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 3.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 3.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 3.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 3.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 3.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 2.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 2.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 2.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 2.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 2.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 2.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 0.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 0.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 0.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 0.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 0.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 0.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 0.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 0.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 0.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 0.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 0.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 0.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 0.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 0.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 0.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 0.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 0.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 0.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 0.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 0.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 0.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 0.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 0.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 0.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 0.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 0.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 0.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 0.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 0.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 0.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 0.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 0.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 0.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 0.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 0.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 0.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 0.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 0.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 0.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 0.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 27.4
FF:10151-102I7 76 years, female 27.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.3
Pig sample Sample description nTPM
Amygdala
nTPM: 34.3
Samples: 4

Max nTPM: 37.4
Min nTPM: 26.3
Sample A Female 37.4
Sample B Female 37.0
Sample C Male 26.3
Sample D Male 36.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 32.4
Samples: 4

Max nTPM: 38.5
Min nTPM: 28.6
Sample A Male 29.4
Sample B Male 32.9
Sample C Female 38.5
Sample D Female 28.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.5
71991822 Antisense, RP_051012_03_E09, Mouse strain C57BL/6J (56 days, male) 0.5
73931408 Antisense, RP_051012_03_E09, Mouse strain C57BL/6J (56 days, male) 0.3

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