A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.7
nTPM
Monaco:
38.8
nTPM
Schmiedel:
34.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.7
HPA sample
nTPM
NK-cell nTPM: 19.7
Samples: 6
Max nTPM: 28.7
Min nTPM: 12.9
P10809_1013
13.6
P10809_1033
20.8
P10809_1052
18.3
P10809_1071
12.9
P10809_1093
28.7
P10809_1103
23.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.8
Monaco sample
nTPM
NK-cell nTPM: 38.8
Samples: 4
Max nTPM: 43.8
Min nTPM: 25.9
RHH5316_R3683
42.4
RHH5224_R3596
43.2
RHH5253_R3625
25.9
RHH5282_R3654
43.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.8
Schmiedel sample id
TPM
NK-cell TPM: 34.8
Samples: 90
Max TPM: 47.1
Min TPM: 28.1
NK_1
47.1
NK_2
41.8
NK_3
41.0
NK_4
39.9
NK_5
39.9
NK_6
39.9
NK_7
39.9
NK_8
39.4
NK_9
38.8
NK_10
38.8
NK_11
38.7
NK_12
38.7
NK_13
38.7
NK_14
38.4
NK_15
38.3
NK_16
38.3
NK_17
38.2
NK_18
37.8
NK_19
37.8
NK_20
37.8
NK_21
37.7
NK_22
37.6
NK_23
36.4
NK_24
36.3
NK_25
36.3
NK_26
36.3
NK_27
36.1
NK_28
36.1
NK_29
36.0
NK_30
35.9
NK_31
35.9
NK_32
35.9
NK_33
35.7
NK_34
35.6
NK_35
35.5
NK_36
35.4
NK_37
35.3
NK_38
35.3
NK_39
35.1
NK_40
34.9
NK_41
34.8
NK_42
34.8
NK_43
34.8
NK_44
34.7
NK_45
34.7
NK_46
34.5
NK_47
34.4
NK_48
34.1
NK_49
34.0
NK_50
33.9
NK_51
33.7
NK_52
33.7
NK_53
33.6
NK_54
33.6
NK_55
33.5
NK_56
33.5
NK_57
33.3
NK_58
33.3
NK_59
33.2
NK_60
33.2
NK_61
33.0
NK_62
32.9
NK_63
32.6
NK_64
32.6
NK_65
32.6
NK_66
32.5
NK_67
32.4
NK_68
32.4
NK_69
32.3
NK_70
32.3
NK_71
32.3
NK_72
32.1
NK_73
32.1
NK_74
32.0
NK_75
31.9
NK_76
31.9
NK_77
31.7
NK_78
31.7
NK_79
31.6
NK_80
30.9
NK_81
30.6
NK_82
30.5
NK_83
30.4
NK_84
30.1
NK_85
29.9
NK_86
29.7
NK_87
29.4
NK_88
29.1
NK_89
28.6
NK_90
28.1
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