A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.7
nTPM
Monaco:
38.2
nTPM
Schmiedel:
21.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
HPA sample
nTPM
Classical monocyte nTPM: 13.1
Samples: 6
Max nTPM: 16.6
Min nTPM: 10.0
P10809_1003
14.3
P10809_1020
16.6
P10809_1039
13.1
P10809_1058
11.0
P10809_1080
10.0
P10809_1107
13.8
Intermediate monocyte nTPM: 15.8
Samples: 6
Max nTPM: 23.4
Min nTPM: 9.9
P10809_1004
22.2
P10809_1023
23.4
P10809_1042
9.9
P10809_1061
15.1
P10809_1081
11.2
P10809_1108
12.8
Non-classical monocyte nTPM: 14.9
Samples: 5
Max nTPM: 19.8
Min nTPM: 11.8
P10809_1005
14.4
P10809_1053
15.3
P10809_1072
19.8
P10809_1082
11.8
P10809_1109
13.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.2
Monaco sample
nTPM
Classical monocyte nTPM: 35.1
Samples: 4
Max nTPM: 41.5
Min nTPM: 29.6
RHH5313_R3680
29.6
RHH5221_R3593
31.8
RHH5250_R3622
41.5
RHH5279_R3651
37.5
Intermediate monocyte nTPM: 30.8
Samples: 4
Max nTPM: 36.0
Min nTPM: 26.9
RHH5314_R3681
36.0
RHH5222_R3594
30.3
RHH5251_R3623
26.9
RHH5280_R3652
30.0
Non-classical monocyte nTPM: 38.2
Samples: 4
Max nTPM: 40.4
Min nTPM: 35.4
RHH5315_R3682
37.2
RHH5223_R3595
40.4
RHH5252_R3624
39.9
RHH5281_R3653
35.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.7
Schmiedel sample id
TPM
Classical monocyte TPM: 16.4
Samples: 91
Max TPM: 20.6
Min TPM: 11.3
MONOCYTES_1
20.6
MONOCYTES_2
20.6
MONOCYTES_3
20.5
MONOCYTES_4
20.5
MONOCYTES_5
20.1
MONOCYTES_6
20.1
MONOCYTES_7
20.0
MONOCYTES_8
20.0
MONOCYTES_9
19.8
MONOCYTES_10
19.6
MONOCYTES_11
19.4
MONOCYTES_12
19.2
MONOCYTES_13
19.1
MONOCYTES_14
19.0
MONOCYTES_15
19.0
MONOCYTES_16
19.0
MONOCYTES_17
19.0
MONOCYTES_18
18.8
MONOCYTES_19
18.7
MONOCYTES_20
18.6
MONOCYTES_21
18.4
MONOCYTES_22
18.4
MONOCYTES_23
18.4
MONOCYTES_24
18.3
MONOCYTES_25
18.1
MONOCYTES_26
18.1
MONOCYTES_27
18.0
MONOCYTES_28
18.0
MONOCYTES_29
17.9
MONOCYTES_30
17.9
MONOCYTES_31
17.8
MONOCYTES_32
17.6
MONOCYTES_33
17.5
MONOCYTES_34
17.5
MONOCYTES_35
17.5
MONOCYTES_36
17.5
MONOCYTES_37
17.4
MONOCYTES_38
17.4
MONOCYTES_39
17.3
MONOCYTES_40
17.2
MONOCYTES_41
17.2
MONOCYTES_42
17.0
MONOCYTES_43
16.9
MONOCYTES_44
16.9
MONOCYTES_45
16.8
MONOCYTES_46
16.8
MONOCYTES_47
16.8
MONOCYTES_48
16.7
MONOCYTES_49
16.6
MONOCYTES_50
16.4
MONOCYTES_51
16.4
MONOCYTES_52
16.2
MONOCYTES_53
16.2
MONOCYTES_54
16.2
MONOCYTES_55
15.8
MONOCYTES_56
15.5
MONOCYTES_57
15.3
MONOCYTES_58
15.3
MONOCYTES_59
15.3
MONOCYTES_60
15.3
MONOCYTES_61
15.2
MONOCYTES_62
15.1
MONOCYTES_63
15.0
MONOCYTES_64
14.9
MONOCYTES_65
14.8
MONOCYTES_66
14.8
MONOCYTES_67
14.7
MONOCYTES_68
14.6
MONOCYTES_69
14.6
MONOCYTES_70
14.5
MONOCYTES_71
14.5
MONOCYTES_72
14.4
MONOCYTES_73
14.3
MONOCYTES_74
14.1
MONOCYTES_75
13.9
MONOCYTES_76
13.8
MONOCYTES_77
13.8
MONOCYTES_78
13.7
MONOCYTES_79
13.6
MONOCYTES_80
13.4
MONOCYTES_81
13.4
MONOCYTES_82
13.3
MONOCYTES_83
13.0
MONOCYTES_84
12.7
MONOCYTES_85
12.3
MONOCYTES_86
12.3
MONOCYTES_87
12.2
MONOCYTES_88
11.7
MONOCYTES_89
11.6
MONOCYTES_90
11.3
MONOCYTES_91
11.3
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Non-classical monocyte TPM: 21.7
Samples: 90
Max TPM: 30.2
Min TPM: 16.0
M2_1
30.2
M2_2
28.6
M2_3
27.3
M2_4
27.2
M2_5
26.7
M2_6
25.6
M2_7
25.6
M2_8
25.4
M2_9
25.4
M2_10
25.4
M2_11
25.2
M2_12
25.0
M2_13
24.9
M2_14
24.8
M2_15
24.8
M2_16
24.7
M2_17
23.9
M2_18
23.8
M2_19
23.8
M2_20
23.8
M2_21
23.7
M2_22
23.6
M2_23
23.6
M2_24
23.5
M2_25
23.4
M2_26
23.4
M2_27
23.3
M2_28
23.3
M2_29
23.3
M2_30
23.2
M2_31
23.1
M2_32
23.1
M2_33
23.0
M2_34
22.6
M2_35
22.5
M2_36
22.4
M2_37
22.3
M2_38
22.3
M2_39
22.3
M2_40
22.3
M2_41
22.3
M2_42
22.2
M2_43
22.2
M2_44
22.0
M2_45
22.0
M2_46
22.0
M2_47
21.7
M2_48
21.7
M2_49
21.7
M2_50
21.6
M2_51
21.6
M2_52
21.3
M2_53
21.3
M2_54
21.1
M2_55
21.0
M2_56
20.9
M2_57
20.8
M2_58
20.6
M2_59
20.5
M2_60
20.4
M2_61
20.3
M2_62
20.2
M2_63
20.1
M2_64
20.0
M2_65
19.8
M2_66
19.7
M2_67
19.6
M2_68
19.5
M2_69
19.4
M2_70
19.1
M2_71
19.1
M2_72
18.9
M2_73
18.9
M2_74
18.6
M2_75
18.6
M2_76
18.5
M2_77
18.4
M2_78
18.4
M2_79
18.3
M2_80
18.0
M2_81
18.0
M2_82
17.9
M2_83
17.8
M2_84
17.5
M2_85
17.5
M2_86
17.5
M2_87
16.7
M2_88
16.7
M2_89
16.2
M2_90
16.0
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