MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.1 nTPM
HPA Brain:81.1 nTPM
GTEx:68.1 nTPM
FANTOM5:148.0 Scaled Tags Per Million
Pig:244.1 nTPM
Mouse:320.7 nTPM
Allen mouse:19.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.7
2586 Male, age 75, left hemisphere 76.7
2019 Male, age 18, unknown 75.7
1827 Male, age 72, unknown 71.8
2411 Female, age 72, unknown 68.5
2219 Male, age 76, both hemispheres 66.9
1870 Female, age 42, unknown 61.2
2828 Female, age 72, unknown 61.1
1833 Male, age 53, unknown 60.7
2666 Male, age 74, left hemisphere 59.9
1830 Male, age 51, unknown 54.4
Dorsal raphe nucleus
nTPM: 68.0
2298 Female, age 72, unknown 82.4
1828 Male, age 53, unknown 75.6
2047 Male, age 72, unknown 70.4
2750 Male, age 76, both hemispheres 62.6
2016 Female, age 72, unknown 49.0
Inferior colliculus
nTPM: 63.0
2097 Female, age 72, unknown 70.0
1848 Female, age 42, unknown 64.5
1890 Male, age 53, unknown 58.7
2849 Male, age 72, unknown 58.6
Median raphe nucleus
nTPM: 67.0
2220 Male, age 76, midline 67.0
Periaquaductal grey, anterior
nTPM: 68.1
1947 Male, age 18, unknown 71.3
1795 Male, age 51, unknown 70.8
2502 Female, age 75, unknown 62.3
Periaquaductal grey, dorsal
nTPM: 56.2
1840 Male, age 53, unknown 62.2
2850 Male, age 76, both hemispheres 56.1
1831 Male, age 72, unknown 54.7
2464 Female, age 72, unknown 51.7
Periaquaductal grey, lateral
nTPM: 56.4
2272 Male, age 74, both hemispheres 63.6
2053 Male, age 18, unknown 54.3
2140 Male, age 76, both hemispheres 51.3
Pretectal area
nTPM: 73.1
2007 Male, age 72, unknown 94.0
1816 Male, age 51, unknown 89.2
1817 Female, age 42, unknown 89.2
2667 Female, age 75, unknown 86.2
1944 Female, age 72, unknown 84.3
1815 Male, age 53, unknown 72.3
2224 Female, age 72, unknown 70.0
2273 Male, age 74, both hemispheres 60.1
2825 Male, age 18, unknown 57.9
2316 Male, age 76, right hemisphere 53.1
2407 Male, age 75, both hemispheres 48.2
Red nucleus
nTPM: 61.6
1821 Female, age 72, unknown 75.7
2725 Female, age 75, unknown 73.5
2785 Male, age 18, unknown 69.8
1954 Female, age 42, unknown 60.7
2584 Male, age 75, left hemisphere 59.3
2503 Female, age 72, unknown 58.5
1904 Male, age 53, unknown 57.9
1865 Male, age 51, unknown 57.6
2769 Male, age 72, unknown 57.6
2227 Male, age 72, unknown 56.4
2823 Male, age 76, right hemisphere 56.4
2588 Male, age 74, left hemisphere 55.9
Substantia nigra
nTPM: 81.1
1916 Female, age 42, unknown 112.1
1851 Male, age 51, unknown 89.0
2241 Male, age 72, unknown 88.8
1889 Female, age 72, unknown 87.7
1941 Male, age 53, unknown 83.7
2665 Male, age 74, both hemispheres 82.6
2409 Female, age 72, unknown 72.0
2699 Male, age 18, unknown 68.1
2583 Male, age 75, right hemisphere 66.1
2590 Female, age 75, unknown 60.9
Superior colliculus
nTPM: 62.6
2087 Female, age 72, unknown 74.9
1796 Male, age 53, unknown 73.5
2587 Male, age 74, left hemisphere 67.2
2261 Male, age 18, unknown 67.0
1895 Male, age 76, right hemisphere 65.9
1839 Male, age 51, unknown 62.5
2668 Female, age 75, unknown 61.2
2664 Male, age 75, both hemispheres 56.5
1913 Female, age 42, unknown 50.5
1995 Male, age 72, unknown 46.3
Ventral tegmental area
nTPM: 72.9
2410 Female, age 72, unknown 91.0
1915 Female, age 42, unknown 86.0
2218 Male, age 76, both hemispheres 81.3
1942 Male, age 51, unknown 62.5
2223 Female, age 72, unknown 61.4
2021 Male, age 53, unknown 55.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.1
Samples: 183

Max nTPM: 144.5
Min nTPM: 32.6
Std nTPM: 21.9
Median nTPM: 62.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 131.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 131.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 130.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 129.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 127.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 122.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 114.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 113.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 109.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.0
FF:10158-103A5 76 years, female 148.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 244.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 162.1
Samples: 4

Max nTPM: 230.1
Min nTPM: 117.7
Sample A Female 230.1
Sample B Female 120.2
Sample C Male 180.2
Sample D Male 117.7
Midbrain
nTPM: 195.6
Samples: 4

Max nTPM: 288.8
Min nTPM: 141.4
Sample A Female 163.4
Sample B Female 141.4
Sample C Male 288.8
Sample D Male 188.8
Periaqueductal gray
nTPM: 127.9
Samples: 3

Max nTPM: 145.9
Min nTPM: 108.7
Sample B Female 129.2
Sample C Male 145.9
Sample D Male 108.7
Superior colliculi
nTPM: 244.1
Samples: 4

Max nTPM: 320.8
Min nTPM: 175.6
Sample A Female 272.1
Sample B Female 175.6
Sample C Male 320.8
Sample D Male 208.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 320.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 320.7
Samples: 4

Max nTPM: 338.4
Min nTPM: 301.6
Sample A Male 338.4
Sample B Male 313.7
Sample C Female 301.6
Sample D Female 329.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 19.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.9
68080709 Antisense, RP_040929_01_G10, Mouse strain C57BL/6J (56 days, male) 19.9

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