A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
195.1
nTPM
Monaco:
421.9
nTPM
Schmiedel:
231.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
195.1
HPA sample
nTPM
Memory B-cell nTPM: 195.1
Samples: 6
Max nTPM: 239.6
Min nTPM: 147.9
P10809_1017
147.9
P10809_1025
239.6
P10809_1044
210.8
P10809_1063
150.7
P10809_1092
202.8
P10809_1105
219.0
Naive B-cell nTPM: 188.2
Samples: 6
Max nTPM: 276.1
Min nTPM: 125.8
P10809_1011
125.8
P10809_1029
195.3
P10809_1048
276.1
P10809_1067
152.4
P10809_1091
185.3
P10809_1104
194.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
421.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 398.0
Samples: 4
Max nTPM: 435.7
Min nTPM: 354.7
RHH5310_R3677
423.5
RHH5218_R3590
378.1
RHH5247_R3619
435.7
RHH5276_R3648
354.7
Naive B-cell nTPM: 357.8
Samples: 4
Max nTPM: 455.6
Min nTPM: 319.8
RHH5308_R3675
319.8
RHH5216_R3588
455.6
RHH5245_R3617
328.6
RHH5274_R3646
327.0
Non-switched memory B-cell nTPM: 417.7
Samples: 4
Max nTPM: 520.1
Min nTPM: 321.3
RHH5309_R3676
426.1
RHH5217_R3589
403.2
RHH5246_R3618
520.1
RHH5275_R3647
321.3
Plasmablast nTPM: 383.0
Samples: 4
Max nTPM: 473.6
Min nTPM: 274.7
RHH5312_R3679
390.3
RHH5220_R3592
473.6
RHH5249_R3621
393.5
RHH5278_R3650
274.7
Switched memory B-cell nTPM: 421.9
Samples: 4
Max nTPM: 487.7
Min nTPM: 326.6
RHH5311_R3678
487.7
RHH5219_R3591
402.7
RHH5248_R3620
470.5
RHH5277_R3649
326.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
231.8
Schmiedel sample id
TPM
Naive B-cell TPM: 231.8
Samples: 91
Max TPM: 316.3
Min TPM: 161.1
B_CELL_NAIVE_1
316.3
B_CELL_NAIVE_2
314.7
B_CELL_NAIVE_3
313.2
B_CELL_NAIVE_4
302.3
B_CELL_NAIVE_5
300.1
B_CELL_NAIVE_6
288.0
B_CELL_NAIVE_7
284.5
B_CELL_NAIVE_8
284.4
B_CELL_NAIVE_9
279.1
B_CELL_NAIVE_10
265.5
B_CELL_NAIVE_11
259.7
B_CELL_NAIVE_12
259.0
B_CELL_NAIVE_13
258.6
B_CELL_NAIVE_14
256.3
B_CELL_NAIVE_15
255.6
B_CELL_NAIVE_16
254.6
B_CELL_NAIVE_17
251.8
B_CELL_NAIVE_18
251.3
B_CELL_NAIVE_19
251.2
B_CELL_NAIVE_20
250.7
B_CELL_NAIVE_21
247.2
B_CELL_NAIVE_22
245.9
B_CELL_NAIVE_23
245.3
B_CELL_NAIVE_24
243.6
B_CELL_NAIVE_25
243.4
B_CELL_NAIVE_26
242.2
B_CELL_NAIVE_27
242.0
B_CELL_NAIVE_28
241.7
B_CELL_NAIVE_29
241.6
B_CELL_NAIVE_30
241.0
B_CELL_NAIVE_31
239.8
B_CELL_NAIVE_32
238.8
B_CELL_NAIVE_33
238.0
B_CELL_NAIVE_34
237.6
B_CELL_NAIVE_35
237.0
B_CELL_NAIVE_36
236.8
B_CELL_NAIVE_37
234.8
B_CELL_NAIVE_38
234.6
B_CELL_NAIVE_39
233.9
B_CELL_NAIVE_40
232.5
B_CELL_NAIVE_41
230.8
B_CELL_NAIVE_42
230.2
B_CELL_NAIVE_43
229.8
B_CELL_NAIVE_44
229.2
B_CELL_NAIVE_45
228.2
B_CELL_NAIVE_46
228.0
B_CELL_NAIVE_47
226.5
B_CELL_NAIVE_48
225.7
B_CELL_NAIVE_49
225.6
B_CELL_NAIVE_50
224.6
B_CELL_NAIVE_51
223.4
B_CELL_NAIVE_52
222.8
B_CELL_NAIVE_53
222.4
B_CELL_NAIVE_54
221.1
B_CELL_NAIVE_55
221.0
B_CELL_NAIVE_56
220.4
B_CELL_NAIVE_57
220.1
B_CELL_NAIVE_58
220.0
B_CELL_NAIVE_59
218.7
B_CELL_NAIVE_60
217.0
B_CELL_NAIVE_61
216.4
B_CELL_NAIVE_62
215.9
B_CELL_NAIVE_63
215.8
B_CELL_NAIVE_64
215.6
B_CELL_NAIVE_65
214.4
B_CELL_NAIVE_66
214.3
B_CELL_NAIVE_67
214.0
B_CELL_NAIVE_68
213.8
B_CELL_NAIVE_69
211.0
B_CELL_NAIVE_70
210.9
B_CELL_NAIVE_71
210.0
B_CELL_NAIVE_72
209.6
B_CELL_NAIVE_73
209.2
B_CELL_NAIVE_74
207.1
B_CELL_NAIVE_75
206.9
B_CELL_NAIVE_76
205.5
B_CELL_NAIVE_77
205.2
B_CELL_NAIVE_78
202.6
B_CELL_NAIVE_79
202.0
B_CELL_NAIVE_80
201.9
B_CELL_NAIVE_81
199.8
B_CELL_NAIVE_82
199.7
B_CELL_NAIVE_83
198.2
B_CELL_NAIVE_84
196.9
B_CELL_NAIVE_85
196.4
B_CELL_NAIVE_86
196.4
B_CELL_NAIVE_87
195.2
B_CELL_NAIVE_88
192.0
B_CELL_NAIVE_89
191.1
B_CELL_NAIVE_90
185.5
B_CELL_NAIVE_91
161.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.