RBMX
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • RBMX
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:195.1 nTPM
Monaco:421.9 nTPM
Schmiedel:231.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

195.1
HPA sample nTPM
Memory B-cell
nTPM: 195.1
Samples: 6

Max nTPM: 239.6
Min nTPM: 147.9
P10809_1017 147.9
P10809_1025 239.6
P10809_1044 210.8
P10809_1063 150.7
P10809_1092 202.8
P10809_1105 219.0
Naive B-cell
nTPM: 188.2
Samples: 6

Max nTPM: 276.1
Min nTPM: 125.8
P10809_1011 125.8
P10809_1029 195.3
P10809_1048 276.1
P10809_1067 152.4
P10809_1091 185.3
P10809_1104 194.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

421.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 398.0
Samples: 4

Max nTPM: 435.7
Min nTPM: 354.7
RHH5310_R3677 423.5
RHH5218_R3590 378.1
RHH5247_R3619 435.7
RHH5276_R3648 354.7
Naive B-cell
nTPM: 357.8
Samples: 4

Max nTPM: 455.6
Min nTPM: 319.8
RHH5308_R3675 319.8
RHH5216_R3588 455.6
RHH5245_R3617 328.6
RHH5274_R3646 327.0
Non-switched memory B-cell
nTPM: 417.7
Samples: 4

Max nTPM: 520.1
Min nTPM: 321.3
RHH5309_R3676 426.1
RHH5217_R3589 403.2
RHH5246_R3618 520.1
RHH5275_R3647 321.3
Plasmablast
nTPM: 383.0
Samples: 4

Max nTPM: 473.6
Min nTPM: 274.7
RHH5312_R3679 390.3
RHH5220_R3592 473.6
RHH5249_R3621 393.5
RHH5278_R3650 274.7
Switched memory B-cell
nTPM: 421.9
Samples: 4

Max nTPM: 487.7
Min nTPM: 326.6
RHH5311_R3678 487.7
RHH5219_R3591 402.7
RHH5248_R3620 470.5
RHH5277_R3649 326.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

231.8
Schmiedel sample id TPM
Naive B-cell
TPM: 231.8
Samples: 91

Max TPM: 316.3
Min TPM: 161.1
B_CELL_NAIVE_1 316.3
B_CELL_NAIVE_2 314.7
B_CELL_NAIVE_3 313.2
B_CELL_NAIVE_4 302.3
B_CELL_NAIVE_5 300.1
B_CELL_NAIVE_6 288.0
B_CELL_NAIVE_7 284.5
B_CELL_NAIVE_8 284.4
B_CELL_NAIVE_9 279.1
B_CELL_NAIVE_10 265.5
B_CELL_NAIVE_11 259.7
B_CELL_NAIVE_12 259.0
B_CELL_NAIVE_13 258.6
B_CELL_NAIVE_14 256.3
B_CELL_NAIVE_15 255.6
B_CELL_NAIVE_16 254.6
B_CELL_NAIVE_17 251.8
B_CELL_NAIVE_18 251.3
B_CELL_NAIVE_19 251.2
B_CELL_NAIVE_20 250.7
B_CELL_NAIVE_21 247.2
B_CELL_NAIVE_22 245.9
B_CELL_NAIVE_23 245.3
B_CELL_NAIVE_24 243.6
B_CELL_NAIVE_25 243.4
B_CELL_NAIVE_26 242.2
B_CELL_NAIVE_27 242.0
B_CELL_NAIVE_28 241.7
B_CELL_NAIVE_29 241.6
B_CELL_NAIVE_30 241.0
B_CELL_NAIVE_31 239.8
B_CELL_NAIVE_32 238.8
B_CELL_NAIVE_33 238.0
B_CELL_NAIVE_34 237.6
B_CELL_NAIVE_35 237.0
B_CELL_NAIVE_36 236.8
B_CELL_NAIVE_37 234.8
B_CELL_NAIVE_38 234.6
B_CELL_NAIVE_39 233.9
B_CELL_NAIVE_40 232.5
B_CELL_NAIVE_41 230.8
B_CELL_NAIVE_42 230.2
B_CELL_NAIVE_43 229.8
B_CELL_NAIVE_44 229.2
B_CELL_NAIVE_45 228.2
B_CELL_NAIVE_46 228.0
B_CELL_NAIVE_47 226.5
B_CELL_NAIVE_48 225.7
B_CELL_NAIVE_49 225.6
B_CELL_NAIVE_50 224.6
B_CELL_NAIVE_51 223.4
B_CELL_NAIVE_52 222.8
B_CELL_NAIVE_53 222.4
B_CELL_NAIVE_54 221.1
B_CELL_NAIVE_55 221.0
B_CELL_NAIVE_56 220.4
B_CELL_NAIVE_57 220.1
B_CELL_NAIVE_58 220.0
B_CELL_NAIVE_59 218.7
B_CELL_NAIVE_60 217.0
B_CELL_NAIVE_61 216.4
B_CELL_NAIVE_62 215.9
B_CELL_NAIVE_63 215.8
B_CELL_NAIVE_64 215.6
B_CELL_NAIVE_65 214.4
B_CELL_NAIVE_66 214.3
B_CELL_NAIVE_67 214.0
B_CELL_NAIVE_68 213.8
B_CELL_NAIVE_69 211.0
B_CELL_NAIVE_70 210.9
B_CELL_NAIVE_71 210.0
B_CELL_NAIVE_72 209.6
B_CELL_NAIVE_73 209.2
B_CELL_NAIVE_74 207.1
B_CELL_NAIVE_75 206.9
B_CELL_NAIVE_76 205.5
B_CELL_NAIVE_77 205.2
B_CELL_NAIVE_78 202.6
B_CELL_NAIVE_79 202.0
B_CELL_NAIVE_80 201.9
B_CELL_NAIVE_81 199.8
B_CELL_NAIVE_82 199.7
B_CELL_NAIVE_83 198.2
B_CELL_NAIVE_84 196.9
B_CELL_NAIVE_85 196.4
B_CELL_NAIVE_86 196.4
B_CELL_NAIVE_87 195.2
B_CELL_NAIVE_88 192.0
B_CELL_NAIVE_89 191.1
B_CELL_NAIVE_90 185.5
B_CELL_NAIVE_91 161.1
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.