A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
192.8
nTPM
Monaco:
368.2
nTPM
Schmiedel:
101.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
192.8
HPA sample
nTPM
Classical monocyte nTPM: 158.7
Samples: 6
Max nTPM: 204.8
Min nTPM: 117.4
P10809_1003
167.5
P10809_1020
204.8
P10809_1039
194.8
P10809_1058
117.4
P10809_1080
129.1
P10809_1107
138.6
Intermediate monocyte nTPM: 192.9
Samples: 6
Max nTPM: 242.3
Min nTPM: 129.5
P10809_1004
170.1
P10809_1023
242.3
P10809_1042
224.5
P10809_1061
211.2
P10809_1081
129.5
P10809_1108
179.5
Non-classical monocyte nTPM: 179.7
Samples: 5
Max nTPM: 245.2
Min nTPM: 115.3
P10809_1005
162.0
P10809_1053
193.1
P10809_1072
245.2
P10809_1082
115.3
P10809_1109
182.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
368.2
Monaco sample
nTPM
Classical monocyte nTPM: 338.9
Samples: 4
Max nTPM: 383.4
Min nTPM: 299.1
RHH5313_R3680
353.0
RHH5221_R3593
383.4
RHH5250_R3622
319.9
RHH5279_R3651
299.1
Intermediate monocyte nTPM: 327.8
Samples: 4
Max nTPM: 364.0
Min nTPM: 269.4
RHH5314_R3681
323.5
RHH5222_R3594
364.0
RHH5251_R3623
269.4
RHH5280_R3652
354.2
Non-classical monocyte nTPM: 368.2
Samples: 4
Max nTPM: 466.6
Min nTPM: 324.9
RHH5315_R3682
341.1
RHH5223_R3595
466.6
RHH5252_R3624
340.1
RHH5281_R3653
324.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.7
Schmiedel sample id
TPM
Classical monocyte TPM: 81.8
Samples: 91
Max TPM: 105.4
Min TPM: 62.9
MONOCYTES_1
105.4
MONOCYTES_2
102.6
MONOCYTES_3
100.3
MONOCYTES_4
99.4
MONOCYTES_5
96.8
MONOCYTES_6
96.2
MONOCYTES_7
95.9
MONOCYTES_8
93.7
MONOCYTES_9
93.7
MONOCYTES_10
92.9
MONOCYTES_11
92.7
MONOCYTES_12
92.1
MONOCYTES_13
91.1
MONOCYTES_14
91.0
MONOCYTES_15
90.2
MONOCYTES_16
90.1
MONOCYTES_17
90.0
MONOCYTES_18
89.8
MONOCYTES_19
89.4
MONOCYTES_20
89.1
MONOCYTES_21
88.7
MONOCYTES_22
88.6
MONOCYTES_23
88.1
MONOCYTES_24
87.9
MONOCYTES_25
87.4
MONOCYTES_26
86.6
MONOCYTES_27
86.2
MONOCYTES_28
85.0
MONOCYTES_29
84.8
MONOCYTES_30
84.8
MONOCYTES_31
84.8
MONOCYTES_32
84.7
MONOCYTES_33
84.3
MONOCYTES_34
83.9
MONOCYTES_35
83.8
MONOCYTES_36
83.8
MONOCYTES_37
83.7
MONOCYTES_38
83.6
MONOCYTES_39
83.2
MONOCYTES_40
83.0
MONOCYTES_41
82.5
MONOCYTES_42
82.4
MONOCYTES_43
82.1
MONOCYTES_44
82.1
MONOCYTES_45
82.1
MONOCYTES_46
81.9
MONOCYTES_47
81.8
MONOCYTES_48
81.6
MONOCYTES_49
81.5
MONOCYTES_50
81.1
MONOCYTES_51
80.5
MONOCYTES_52
80.5
MONOCYTES_53
80.4
MONOCYTES_54
80.0
MONOCYTES_55
80.0
MONOCYTES_56
79.9
MONOCYTES_57
79.4
MONOCYTES_58
79.0
MONOCYTES_59
78.9
MONOCYTES_60
78.7
MONOCYTES_61
78.3
MONOCYTES_62
78.2
MONOCYTES_63
78.0
MONOCYTES_64
77.8
MONOCYTES_65
77.4
MONOCYTES_66
76.9
MONOCYTES_67
76.4
MONOCYTES_68
76.2
MONOCYTES_69
75.9
MONOCYTES_70
74.8
MONOCYTES_71
74.3
MONOCYTES_72
74.0
MONOCYTES_73
73.4
MONOCYTES_74
72.9
MONOCYTES_75
72.7
MONOCYTES_76
72.0
MONOCYTES_77
71.4
MONOCYTES_78
70.8
MONOCYTES_79
70.8
MONOCYTES_80
70.7
MONOCYTES_81
70.3
MONOCYTES_82
70.1
MONOCYTES_83
69.4
MONOCYTES_84
69.4
MONOCYTES_85
68.6
MONOCYTES_86
68.5
MONOCYTES_87
68.3
MONOCYTES_88
67.5
MONOCYTES_89
67.0
MONOCYTES_90
65.2
MONOCYTES_91
62.9
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Non-classical monocyte TPM: 101.7
Samples: 90
Max TPM: 141.0
Min TPM: 77.1
M2_1
141.0
M2_2
137.9
M2_3
133.9
M2_4
133.1
M2_5
130.8
M2_6
130.2
M2_7
126.5
M2_8
124.9
M2_9
124.9
M2_10
120.9
M2_11
119.3
M2_12
118.9
M2_13
117.7
M2_14
115.8
M2_15
114.7
M2_16
114.3
M2_17
113.5
M2_18
112.8
M2_19
111.1
M2_20
110.6
M2_21
110.5
M2_22
110.3
M2_23
108.2
M2_24
107.2
M2_25
106.9
M2_26
106.5
M2_27
105.9
M2_28
105.1
M2_29
104.6
M2_30
104.6
M2_31
104.4
M2_32
103.8
M2_33
103.5
M2_34
103.3
M2_35
103.0
M2_36
103.0
M2_37
102.8
M2_38
102.4
M2_39
102.3
M2_40
102.2
M2_41
100.9
M2_42
100.8
M2_43
100.7
M2_44
100.5
M2_45
100.4
M2_46
100.2
M2_47
99.1
M2_48
98.7
M2_49
98.2
M2_50
98.1
M2_51
98.0
M2_52
97.2
M2_53
96.8
M2_54
96.4
M2_55
96.4
M2_56
96.2
M2_57
96.1
M2_58
94.9
M2_59
93.8
M2_60
93.8
M2_61
93.3
M2_62
93.0
M2_63
92.7
M2_64
92.7
M2_65
92.5
M2_66
92.4
M2_67
92.1
M2_68
91.5
M2_69
91.2
M2_70
90.6
M2_71
90.2
M2_72
88.9
M2_73
88.7
M2_74
88.4
M2_75
88.0
M2_76
87.6
M2_77
87.2
M2_78
87.0
M2_79
86.8
M2_80
86.7
M2_81
85.9
M2_82
85.3
M2_83
85.2
M2_84
85.1
M2_85
84.5
M2_86
84.5
M2_87
84.2
M2_88
83.3
M2_89
83.2
M2_90
77.1
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