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BETA
  • SUMMARY

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  • BRAIN

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  • EVOLUTION

  • RPL10
EVOLUTIONARY THALAMUS Show tissue menu
BRAIN55 EYE3 ENDOCRINE TISSUES4 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER2 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM6 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE11 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CLAUSTRUM CUNEUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI
MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREOPTIC AREA
PUTAMEN SEPTUM SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS THALAMUS VENTRAL SPINAL CORD WHITE MATTER
CORNEA LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
DUCTUS DEFERENS EPIDIDYMIS PENIS PROSTATE SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:650.6 nTPM
FANTOM5:44.6 Scaled Tags Per Million
Macaque:3.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

650.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 445.5
2396 Male, age 61, right hemisphere 622.4
2497 Male, age 66, unknown 367.7
2032 Female, age 42, unknown 346.4
Centromedial thalamic nucleus
nTPM: 346.7
2279 Female, age 85, left hemisphere 355.9
2401 Male, age 76, right hemisphere 337.5
Habenula
nTPM: 364.6
1957 Male, age 80, both hemispheres 399.9
2252 Male, age 62, unknown 386.7
2276 Male, age 66, unknown 341.0
2203 Male, age 61, left hemisphere 330.7
Lateral geniculate body
nTPM: 385.0
2575 Female, age 94, right hemisphere 525.6
2841 Male, age 80, both hemispheres 449.5
2857 Male, age 74, right hemisphere 421.8
2035 Female, age 72, unknown 373.6
1953 Male, age 62, unknown 364.1
2659 Male, age 66, unknown 354.6
2106 Female, age 67, right hemisphere 306.0
2399 Male, age 61, left hemisphere 285.0
Lateral thalamic nuclei
nTPM: 420.3
2573 Female, age 94, left hemisphere 504.6
2765 Female, age 67, both hemispheres 456.8
2661 Female, age 72, unknown 418.0
2577 Male, age 74, both hemispheres 403.6
1903 Male, age 76, left hemisphere 318.6
Medial dorsal thalamic nucleus
nTPM: 418.1
2572 Female, age 94, right hemisphere 818.6
1971 Male, age 61, right hemisphere 463.4
1930 Female, age 42, unknown 442.8
1810 Male, age 48, unknown 428.7
2492 Male, age 75, right hemisphere 403.0
2039 Female, age 72, unknown 393.9
2402 Female, age 67, both hemispheres 383.2
2576 Male, age 74, both hemispheres 382.4
1859 Male, age 76, both hemispheres 364.4
2498 Male, age 66, unknown 361.9
2026 Male, age 62, unknown 350.1
2660 Female, age 72, unknown 339.3
2283 Male, age 80, right hemisphere 303.2
Medial geniculate body
nTPM: 415.8
2571 Male, age 75, right hemisphere 566.3
2650 Female, age 94, left hemisphere 498.4
2049 Male, age 76, both hemispheres 435.7
2657 Male, age 74, right hemisphere 413.7
2217 Female, age 72, unknown 352.5
2207 Male, age 80, right hemisphere 340.6
1811 Female, age 42, unknown 303.1
Nucleus reuniens
nTPM: 440.9
2210 Female, age 85, left hemisphere 464.5
2205 Male, age 80, left hemisphere 440.2
2212 Female, age 67, left hemisphere 417.9
Nucleus rhomboideus
nTPM: 399.0
2213 Female, age 67, left hemisphere 465.3
2280 Female, age 85, left hemisphere 390.6
2206 Male, age 80, both hemispheres 341.0
Posterior thalamic nucleus
nTPM: 650.6
2649 Female, age 94, both hemispheres 1269.5
2655 Male, age 74, right hemisphere 520.9
2266 Male, age 76, right hemisphere 440.5
2495 Female, age 67, right hemisphere 371.3
Pulvinar
nTPM: 356.6
2499 Male, age 66, unknown 463.5
2496 Female, age 67, right hemisphere 403.3
1972 Male, age 62, unknown 395.0
1929 Male, age 48, unknown 365.6
2214 Male, age 76, right hemisphere 354.4
1932 Male, age 80, right hemisphere 352.5
2582 Female, age 72, unknown 317.5
2724 Male, age 74, right hemisphere 309.4
2398 Male, age 61, left hemisphere 303.3
1899 Female, age 42, unknown 301.2
Subthalamic nucleus
nTPM: 442.7
2056 Female, age 72, unknown 589.8
2658 Male, age 74, both hemispheres 506.0
2124 Male, age 62, unknown 494.2
2275 Male, age 66, unknown 437.0
2779 Female, age 42, unknown 411.2
2216 Male, age 48, unknown 392.1
2282 Male, age 61, both hemispheres 386.2
2406 Female, age 72, unknown 325.5
Ventral posterolateral thalamic nucleus
nTPM: 351.1
2197 Male, age 80, both hemispheres 394.5
2578 Male, age 74, both hemispheres 381.2
2740 Male, age 76, right hemisphere 371.8
2397 Male, age 61, right hemisphere 350.5
2570 Male, age 75, right hemisphere 343.6
2581 Female, age 72, unknown 264.9
Ventral posteromedial thalamic nucleus
nTPM: 362.9
2653 Male, age 74, both hemispheres 395.6
2281 Male, age 75, right hemisphere 384.9
2127 Male, age 76, right hemisphere 382.5
2202 Male, age 61, left hemisphere 358.5
2758 Male, age 80, both hemispheres 292.8
Ventral thalamic nuclei
nTPM: 401.9
2291 Female, age 72, unknown 516.2
2580 Male, age 66, unknown 438.8
1912 Female, age 42, unknown 413.3
1860 Male, age 76, both hemispheres 409.0
1845 Male, age 48, unknown 404.9
2285 Male, age 62, unknown 399.6
2652 Male, age 74, left hemisphere 362.2
2858 Female, age 72, unknown 340.2
2204 Male, age 80, both hemispheres 332.7
Zona incerta
nTPM: 391.2
2822 Male, age 74, right hemisphere 499.6
2215 Male, age 66, unknown 441.2
2403 Male, age 62, unknown 392.9
2663 Female, age 72, unknown 316.0
2208 Male, age 80, right hemisphere 306.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 44.6
FF:10154-103A1 76 years, female 44.6

THALAMUS - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.0
Macaque sample Sample description nTPM
Habenula
nTPM: 3.0
Samples: 1

Max nTPM: 3.0
Min nTPM: 3.0
Sample A 3.0
Lateral thalamic nuclei
nTPM: 2.7
Samples: 2

Max nTPM: 3.2
Min nTPM: 2.1
Sample A 3.2
Sample B 2.1
Thalamus
nTPM: 2.1
Samples: 2

Max nTPM: 2.2
Min nTPM: 2.0
Sample A 2.2
Sample B 2.0

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