MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:37.4 nTPM
GTEx:25.5 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:49.1 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
1870 Female, age 42, unknown 35.6
2828 Female, age 72, unknown 31.9
1827 Male, age 72, unknown 30.9
2586 Male, age 75, left hemisphere 30.1
2411 Female, age 72, unknown 28.9
2019 Male, age 18, unknown 27.2
1830 Male, age 51, unknown 25.7
1833 Male, age 53, unknown 25.5
2666 Male, age 74, left hemisphere 23.4
2219 Male, age 76, both hemispheres 21.0
Dorsal raphe nucleus
nTPM: 34.0
2298 Female, age 72, unknown 42.3
1828 Male, age 53, unknown 32.8
2047 Male, age 72, unknown 32.7
2016 Female, age 72, unknown 32.5
2750 Male, age 76, both hemispheres 29.7
Inferior colliculus
nTPM: 29.0
2097 Female, age 72, unknown 33.3
1848 Female, age 42, unknown 27.8
2849 Male, age 72, unknown 27.6
1890 Male, age 53, unknown 27.5
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Periaquaductal grey, anterior
nTPM: 32.0
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 32.3
2502 Female, age 75, unknown 28.1
Periaquaductal grey, dorsal
nTPM: 28.0
1840 Male, age 53, unknown 31.5
2850 Male, age 76, both hemispheres 29.0
2464 Female, age 72, unknown 26.9
1831 Male, age 72, unknown 24.6
Periaquaductal grey, lateral
nTPM: 26.8
2140 Male, age 76, both hemispheres 27.7
2053 Male, age 18, unknown 26.9
2272 Male, age 74, both hemispheres 25.8
Pretectal area
nTPM: 30.3
2667 Female, age 75, unknown 36.2
1817 Female, age 42, unknown 33.1
1816 Male, age 51, unknown 32.4
2007 Male, age 72, unknown 32.0
2224 Female, age 72, unknown 31.2
2825 Male, age 18, unknown 31.2
2273 Male, age 74, both hemispheres 29.3
1944 Female, age 72, unknown 28.0
1815 Male, age 53, unknown 27.8
2316 Male, age 76, right hemisphere 27.4
2407 Male, age 75, both hemispheres 24.4
Red nucleus
nTPM: 30.2
1821 Female, age 72, unknown 37.5
2725 Female, age 75, unknown 34.8
2769 Male, age 72, unknown 32.2
1904 Male, age 53, unknown 31.5
2503 Female, age 72, unknown 31.4
2785 Male, age 18, unknown 30.8
2227 Male, age 72, unknown 29.8
1954 Female, age 42, unknown 29.7
1865 Male, age 51, unknown 28.9
2823 Male, age 76, right hemisphere 27.4
2588 Male, age 74, left hemisphere 26.5
2584 Male, age 75, left hemisphere 21.5
Substantia nigra
nTPM: 31.9
1916 Female, age 42, unknown 42.4
2409 Female, age 72, unknown 34.1
1889 Female, age 72, unknown 33.9
1851 Male, age 51, unknown 33.4
2241 Male, age 72, unknown 31.5
1941 Male, age 53, unknown 30.7
2699 Male, age 18, unknown 30.6
2665 Male, age 74, both hemispheres 30.5
2583 Male, age 75, right hemisphere 27.2
2590 Female, age 75, unknown 24.7
Superior colliculus
nTPM: 29.3
1796 Male, age 53, unknown 35.7
1895 Male, age 76, right hemisphere 30.8
2668 Female, age 75, unknown 30.2
1913 Female, age 42, unknown 30.0
2587 Male, age 74, left hemisphere 29.7
1995 Male, age 72, unknown 28.3
2664 Male, age 75, both hemispheres 28.2
1839 Male, age 51, unknown 27.4
2087 Female, age 72, unknown 26.5
2261 Male, age 18, unknown 25.8
Ventral tegmental area
nTPM: 30.3
1915 Female, age 42, unknown 33.3
1942 Male, age 51, unknown 31.1
2410 Female, age 72, unknown 31.0
2218 Male, age 76, both hemispheres 30.7
2223 Female, age 72, unknown 28.6
2021 Male, age 53, unknown 27.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 183

Max nTPM: 44.5
Min nTPM: 15.8
Std nTPM: 4.7
Median nTPM: 24.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 44.5
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 41.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 39.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 38.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 37.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 36.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 36.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 35.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 35.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 35.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.3
FF:10158-103A5 76 years, female 38.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.7
Samples: 4

Max nTPM: 36.1
Min nTPM: 15.5
Sample A Female 31.0
Sample B Female 24.3
Sample C Male 36.1
Sample D Male 15.5
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 29.3
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 21.5
Sample C Male 29.3
Sample D Male 23.1
Periaqueductal gray
nTPM: 17.8
Samples: 3

Max nTPM: 20.6
Min nTPM: 16.3
Sample B Female 16.6
Sample C Male 20.6
Sample D Male 16.3
Superior colliculi
nTPM: 26.4
Samples: 4

Max nTPM: 29.4
Min nTPM: 24.6
Sample A Female 26.6
Sample B Female 24.6
Sample C Male 29.4
Sample D Male 25.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.1
Samples: 4

Max nTPM: 54.8
Min nTPM: 46.1
Sample A Male 47.2
Sample B Male 48.2
Sample C Female 54.8
Sample D Female 46.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
76115741 Antisense, RP_060620_02_C09, Mouse strain C57BL/6J (56 days, male) 2.1
69817366 Antisense, RP_050510_03_C01, Mouse strain C57BL/6J (56 days, male) 1.0

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