MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA Brain:72.5 nTPM
GTEx:16.5 nTPM
FANTOM5:120.5 Scaled Tags Per Million
Mouse:47.2 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.5
2019 Male, age 18, unknown 84.5
2411 Female, age 72, unknown 75.6
1833 Male, age 53, unknown 75.4
1870 Female, age 42, unknown 70.8
1830 Male, age 51, unknown 70.2
1827 Male, age 72, unknown 67.2
2828 Female, age 72, unknown 64.9
2219 Male, age 76, both hemispheres 57.7
2666 Male, age 74, left hemisphere 54.4
2586 Male, age 75, left hemisphere 54.1
Dorsal raphe nucleus
nTPM: 60.1
2750 Male, age 76, both hemispheres 71.0
1828 Male, age 53, unknown 62.5
2298 Female, age 72, unknown 59.4
2016 Female, age 72, unknown 58.9
2047 Male, age 72, unknown 48.7
Inferior colliculus
nTPM: 59.8
2097 Female, age 72, unknown 64.8
1848 Female, age 42, unknown 60.0
2849 Male, age 72, unknown 58.2
1890 Male, age 53, unknown 56.5
Median raphe nucleus
nTPM: 61.1
2220 Male, age 76, midline 61.1
Periaquaductal grey, anterior
nTPM: 57.8
1947 Male, age 18, unknown 61.7
2502 Female, age 75, unknown 61.4
1795 Male, age 51, unknown 50.4
Periaquaductal grey, dorsal
nTPM: 55.9
2850 Male, age 76, both hemispheres 66.0
1831 Male, age 72, unknown 59.4
2464 Female, age 72, unknown 52.1
1840 Male, age 53, unknown 46.0
Periaquaductal grey, lateral
nTPM: 63.8
2272 Male, age 74, both hemispheres 73.6
2140 Male, age 76, both hemispheres 62.7
2053 Male, age 18, unknown 55.2
Pretectal area
nTPM: 67.7
1817 Female, age 42, unknown 79.8
1815 Male, age 53, unknown 75.3
2273 Male, age 74, both hemispheres 74.7
2007 Male, age 72, unknown 72.4
1816 Male, age 51, unknown 68.7
1944 Female, age 72, unknown 67.6
2316 Male, age 76, right hemisphere 66.7
2224 Female, age 72, unknown 63.4
2667 Female, age 75, unknown 61.8
2407 Male, age 75, both hemispheres 61.5
2825 Male, age 18, unknown 52.8
Red nucleus
nTPM: 72.5
2503 Female, age 72, unknown 80.1
1821 Female, age 72, unknown 78.3
1865 Male, age 51, unknown 78.2
2785 Male, age 18, unknown 78.2
1904 Male, age 53, unknown 77.9
1954 Female, age 42, unknown 76.7
2725 Female, age 75, unknown 75.5
2227 Male, age 72, unknown 75.4
2769 Male, age 72, unknown 73.2
2823 Male, age 76, right hemisphere 68.1
2584 Male, age 75, left hemisphere 56.1
2588 Male, age 74, left hemisphere 52.9
Substantia nigra
nTPM: 59.1
1889 Female, age 72, unknown 65.9
1851 Male, age 51, unknown 63.4
1916 Female, age 42, unknown 62.6
1941 Male, age 53, unknown 61.7
2590 Female, age 75, unknown 60.5
2583 Male, age 75, right hemisphere 59.3
2409 Female, age 72, unknown 58.9
2699 Male, age 18, unknown 56.0
2241 Male, age 72, unknown 52.4
2665 Male, age 74, both hemispheres 50.4
Superior colliculus
nTPM: 64.2
1913 Female, age 42, unknown 75.0
1995 Male, age 72, unknown 72.9
2261 Male, age 18, unknown 66.7
1839 Male, age 51, unknown 65.7
2587 Male, age 74, left hemisphere 65.6
2087 Female, age 72, unknown 64.8
1895 Male, age 76, right hemisphere 63.8
2668 Female, age 75, unknown 60.4
1796 Male, age 53, unknown 59.9
2664 Male, age 75, both hemispheres 47.1
Ventral tegmental area
nTPM: 61.5
2223 Female, age 72, unknown 71.2
2410 Female, age 72, unknown 69.6
2218 Male, age 76, both hemispheres 64.0
2021 Male, age 53, unknown 55.3
1915 Female, age 42, unknown 55.0
1942 Male, age 51, unknown 54.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.5
Samples: 183

Max nTPM: 37.3
Min nTPM: 8.9
Std nTPM: 5.1
Median nTPM: 15.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 37.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 35.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 31.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 30.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 29.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 28.2
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 26.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 25.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.5
FF:10158-103A5 76 years, female 120.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.1
Samples: 4

Max nTPM: 52.0
Min nTPM: 43.6
Sample A Male 43.6
Sample B Male 48.4
Sample C Female 52.0
Sample D Female 44.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71789855 Antisense, RP_050921_03_G06, Mouse strain C57BL/6J (56 days, male) 0.4

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