HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.9 nTPM
HPA Brain:33.6 nTPM
GTEx:70.9 nTPM
FANTOM5:132.3 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:63.6 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 33.6
Sample id Sample description nTPM
Hippocampus
nTPM: 28.9
1898 Male, age 80, left hemisphere 40.0
1855 Male, age 76, left hemisphere 29.9
2621 Female, age 67, right hemisphere 29.0
1911 Female, age 85, right hemisphere 27.2
2529 Female, age 94, left hemisphere 26.9
2148 Female, age 91, left hemisphere 20.2
Dentate gyrus
nTPM: 28.0
1927 Female, age 91, both hemispheres 36.6
2530 Female, age 94, left hemisphere 33.1
2010 Male, age 76, both hemispheres 32.3
2246 Female, age 85, both hemispheres 25.4
2528 Male, age 74, both hemispheres 22.8
2531 Female, age 67, both hemispheres 18.0
Entorhinal gyrus
nTPM: 24.3
1938 Female, age 85, left hemisphere 33.2
1787 Male, age 76, left hemisphere 23.6
2117 Female, age 91, right hemisphere 23.6
2764 Male, age 80, right hemisphere 23.6
2686 Male, age 75, right hemisphere 22.2
2613 Female, age 94, left hemisphere 19.4
Hippocampus, CA1
nTPM: 30.4
2749 Male, age 80, left hemisphere 44.5
1873 Female, age 85, both hemispheres 32.3
2045 Male, age 76, both hemispheres 27.5
2527 Male, age 74, both hemispheres 27.2
2082 Female, age 91, right hemisphere 20.4
Hippocampus, CA2
nTPM: 31.3
1892 Male, age 76, both hemispheres 39.8
1963 Male, age 80, left hemisphere 35.6
2249 Male, age 74, both hemispheres 35.0
2437 Female, age 94, left hemisphere 27.7
1940 Female, age 85, left hemisphere 26.9
2113 Female, age 91, right hemisphere 22.5
Hippocampus, CA3
nTPM: 27.5
2137 Male, age 80, left hemisphere 37.2
1867 Male, age 76, both hemispheres 33.1
1891 Female, age 85, both hemispheres 31.1
2436 Male, age 74, both hemispheres 29.3
2620 Female, age 94, left hemisphere 17.5
2861 Female, age 67, both hemispheres 16.5
Parahippocampal cortex
nTPM: 28.6
1850 Male, age 80, both hemispheres 38.9
1933 Female, age 85, both hemispheres 33.4
2245 Female, age 91, both hemispheres 30.5
2250 Female, age 67, right hemisphere 30.4
1990 Female, age 91, right hemisphere 28.0
2018 Male, age 76, both hemispheres 27.8
2693 Female, age 94, both hemispheres 26.9
2532 Female, age 72, left hemisphere 25.1
2692 Male, age 74, both hemispheres 24.6
2622 Female, age 67, right hemisphere 20.3
Perirhinal gyrus
nTPM: 33.6
1841 Female, age 85, right hemisphere 40.6
1794 Male, age 80, right hemisphere 35.0
1847 Female, age 91, left hemisphere 34.4
2848 Male, age 76, right hemisphere 30.5
2521 Female, age 94, right hemisphere 27.5
Subiculum
nTPM: 27.1
1901 Male, age 80, both hemispheres 32.3
2438 Female, age 94, left hemisphere 29.0
2042 Male, age 76, both hemispheres 28.0
1977 Female, age 85, both hemispheres 27.8
2619 Male, age 74, both hemispheres 23.2
2729 Female, age 91, right hemisphere 22.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 70.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 70.9
Samples: 255

Max nTPM: 235.0
Min nTPM: 24.7
Std nTPM: 20.4
Median nTPM: 66.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 235.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 131.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 117.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 116.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 115.2
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 114.9
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 114.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 114.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 112.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 110.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 108.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 132.3
FF:10169-103B7 60 years, female 176.5
FF:10153-102I9 76 years, female 88.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 30.3
Pig sample Sample description nTPM
Subiculum
nTPM: 28.4
Samples: 4

Max nTPM: 32.1
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 28.9
Sample C Male 31.5
Sample D Male 32.1
Dorsal hippocampus
nTPM: 25.3
Samples: 4

Max nTPM: 30.7
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 25.5
Sample C Male 25.0
Sample D Male 30.7
Entorhinal cortex
nTPM: 30.3
Samples: 4

Max nTPM: 35.8
Min nTPM: 27.7
Sample A Female 29.0
Sample B Female 28.8
Sample C Male 27.7
Sample D Male 35.8
Ventral hippocampus
nTPM: 26.0
Samples: 4

Max nTPM: 31.7
Min nTPM: 20.7
Sample A Female 25.1
Sample B Female 31.7
Sample C Male 20.7
Sample D Male 26.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 63.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.2
Samples: 4

Max nTPM: 67.2
Min nTPM: 41.8
Sample A Male 53.9
Sample B Male 67.2
Sample C Female 58.0
Sample D Female 41.8
Hippocampal formation
nTPM: 63.6
Samples: 4

Max nTPM: 74.8
Min nTPM: 56.2
Sample A Male 74.8
Sample B Male 56.2
Sample C Female 62.6
Sample D Female 60.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
75198106 Antisense, RP_060502_02_A01, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo