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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:79.2 nTPM
HPA Brain:29.6 nTPM
GTEx:79.2 nTPM
FANTOM5:92.6 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:55.4 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.6
Sample id Sample description nTPM
Amygdala
nTPM: 29.6
2814 Male, age 76, right hemisphere 38.2
2514 Male, age 75, right hemisphere 29.2
2695 Female, age 67, right hemisphere 28.0
1987 Female, age 91, left hemisphere 27.3
2517 Female, age 94, left hemisphere 25.6
Basal amygdala
nTPM: 23.3
1955 Male, age 76, both hemispheres 29.8
2609 Male, age 75, right hemisphere 25.1
2685 Female, age 94, left hemisphere 23.8
2110 Male, age 80, left hemisphere 23.5
2243 Female, age 91, right hemisphere 18.9
2827 Female, age 67, right hemisphere 18.6
Central amygdala
nTPM: 26.6
1905 Male, age 76, both hemispheres 30.8
2826 Female, age 94, left hemisphere 30.0
2515 Male, age 75, right hemisphere 24.2
2239 Male, age 80, left hemisphere 24.1
2701 Female, age 91, right hemisphere 24.1
Corticomedial amygdala
nTPM: 24.8
2240 Male, age 76, both hemispheres 28.2
2428 Male, age 75, right hemisphere 28.1
2429 Female, age 94, left hemisphere 26.4
2829 Male, age 80, left hemisphere 26.0
2242 Female, age 91, right hemisphere 22.3
2535 Female, age 67, right hemisphere 17.7
Lateral amygdala
nTPM: 22.4
1883 Male, age 76, both hemispheres 34.1
2516 Male, age 75, right hemisphere 25.2
2534 Female, age 94, left hemisphere 24.5
2830 Female, age 67, right hemisphere 18.9
2256 Male, age 80, left hemisphere 16.3
2255 Female, age 91, right hemisphere 15.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 79.2
Samples: 181

Max nTPM: 311.3
Min nTPM: 45.8
Std nTPM: 27.8
Median nTPM: 73.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 311.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 188.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 146.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 145.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 142.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 141.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 138.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 130.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 130.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 127.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 120.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 118.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 111.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 108.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 107.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 106.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 106.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 104.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 103.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 103.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 103.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 102.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 102.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 101.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 100.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 100.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 99.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 98.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 97.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 97.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 97.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 96.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 94.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 94.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 92.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 92.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 90.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 90.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 90.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 88.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 88.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 88.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 87.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 87.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 86.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 86.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 85.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 85.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 85.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 82.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 81.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 81.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 81.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 81.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 81.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 80.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 80.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 80.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 80.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 80.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 80.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 79.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 79.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 78.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 78.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 78.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 77.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 77.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 77.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 76.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 76.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 76.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 76.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 76.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 76.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 75.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 75.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 75.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 74.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 74.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 74.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 73.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 73.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 73.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 73.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 73.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 73.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 73.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 72.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 72.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 71.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 71.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 71.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 71.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 71.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 70.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 70.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 70.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 70.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 69.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 69.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 69.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 68.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 68.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 68.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 68.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 68.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 67.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 66.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 66.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 66.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 66.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 66.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 65.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 65.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 65.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 64.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 64.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 63.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 62.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 62.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 62.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 62.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 61.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 60.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 60.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 60.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 60.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 60.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 60.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 59.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 59.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 59.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 59.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 59.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 59.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 58.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 58.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 57.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 57.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 56.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 56.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 56.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 56.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 56.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 55.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 54.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 54.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 54.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 53.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 53.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 51.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 50.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 48.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 47.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 47.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 47.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 92.6
FF:10151-102I7 76 years, female 92.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.9
Pig sample Sample description nTPM
Amygdala
nTPM: 29.0
Samples: 4

Max nTPM: 31.2
Min nTPM: 25.6
Sample A Female 25.6
Sample B Female 30.8
Sample C Male 28.2
Sample D Male 31.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 55.4
Samples: 4

Max nTPM: 69.1
Min nTPM: 47.7
Sample A Male 47.7
Sample B Male 69.1
Sample C Female 50.2
Sample D Female 54.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.9
75198106 Antisense, RP_060502_02_A01, Mouse strain C57BL/6J (56 days, male) 0.9

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