HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:72.6 nTPM
HPA Brain:63.2 nTPM
GTEx:72.6 nTPM
FANTOM5:155.9 Scaled Tags Per Million
Pig:253.0 nTPM
Mouse:188.5 nTPM
Allen mouse:16.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023117Antibody HPA023553
Glial cells MediumNot detected
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 63.2
Sample id Sample description nTPM
Hippocampus
nTPM: 62.6
1898 Male, age 80, left hemisphere 77.6
2621 Female, age 67, right hemisphere 63.5
2529 Female, age 94, left hemisphere 62.4
1855 Male, age 76, left hemisphere 61.5
1911 Female, age 85, right hemisphere 58.5
2148 Female, age 91, left hemisphere 52.1
Dentate gyrus
nTPM: 60.1
2010 Male, age 76, both hemispheres 70.4
1927 Female, age 91, both hemispheres 65.0
2530 Female, age 94, left hemisphere 63.5
2246 Female, age 85, both hemispheres 59.0
2528 Male, age 74, both hemispheres 56.7
2531 Female, age 67, both hemispheres 45.8
Entorhinal gyrus
nTPM: 55.4
2117 Female, age 91, right hemisphere 61.0
1938 Female, age 85, left hemisphere 60.4
1787 Male, age 76, left hemisphere 59.3
2686 Male, age 75, right hemisphere 54.4
2764 Male, age 80, right hemisphere 52.4
2613 Female, age 94, left hemisphere 44.8
Hippocampus, CA1
nTPM: 63.2
2749 Male, age 80, left hemisphere 79.4
2045 Male, age 76, both hemispheres 68.1
1873 Female, age 85, both hemispheres 62.2
2527 Male, age 74, both hemispheres 55.6
2082 Female, age 91, right hemisphere 50.8
Hippocampus, CA2
nTPM: 62.8
1892 Male, age 76, both hemispheres 74.7
1940 Female, age 85, left hemisphere 65.0
1963 Male, age 80, left hemisphere 61.7
2113 Female, age 91, right hemisphere 61.5
2437 Female, age 94, left hemisphere 57.4
2249 Male, age 74, both hemispheres 56.3
Hippocampus, CA3
nTPM: 55.5
1867 Male, age 76, both hemispheres 67.2
2137 Male, age 80, left hemisphere 66.2
1891 Female, age 85, both hemispheres 60.1
2436 Male, age 74, both hemispheres 57.9
2861 Female, age 67, both hemispheres 43.5
2620 Female, age 94, left hemisphere 38.4
Parahippocampal cortex
nTPM: 56.7
2018 Male, age 76, both hemispheres 70.1
1850 Male, age 80, both hemispheres 63.5
2245 Female, age 91, both hemispheres 63.5
1990 Female, age 91, right hemisphere 59.4
1933 Female, age 85, both hemispheres 57.1
2250 Female, age 67, right hemisphere 55.9
2532 Female, age 72, left hemisphere 55.1
2693 Female, age 94, both hemispheres 50.1
2692 Male, age 74, both hemispheres 48.7
2622 Female, age 67, right hemisphere 44.2
Perirhinal gyrus
nTPM: 63.1
1847 Female, age 91, left hemisphere 70.7
1841 Female, age 85, right hemisphere 66.7
1794 Male, age 80, right hemisphere 64.6
2521 Female, age 94, right hemisphere 63.1
2848 Male, age 76, right hemisphere 50.5
Subiculum
nTPM: 59.0
2042 Male, age 76, both hemispheres 72.4
1901 Male, age 80, both hemispheres 61.9
2438 Female, age 94, left hemisphere 59.0
1977 Female, age 85, both hemispheres 58.5
2729 Female, age 91, right hemisphere 54.3
2619 Male, age 74, both hemispheres 48.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 72.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 72.6
Samples: 255

Max nTPM: 129.0
Min nTPM: 39.9
Std nTPM: 14.9
Median nTPM: 71.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 129.0
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 128.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 121.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 116.8
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 111.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 111.2
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 108.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 107.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 106.2
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 102.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 102.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 155.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 155.9
FF:10169-103B7 60 years, female 158.9
FF:10153-102I9 76 years, female 152.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 253.0
Pig sample Sample description nTPM
Subiculum
nTPM: 214.3
Samples: 4

Max nTPM: 316.0
Min nTPM: 167.3
Sample A Female 316.0
Sample B Female 202.6
Sample C Male 171.2
Sample D Male 167.3
Dorsal hippocampus
nTPM: 253.0
Samples: 4

Max nTPM: 341.0
Min nTPM: 188.0
Sample A Female 341.0
Sample B Female 228.6
Sample C Male 254.3
Sample D Male 188.0
Entorhinal cortex
nTPM: 198.3
Samples: 4

Max nTPM: 227.4
Min nTPM: 147.0
Sample A Female 208.5
Sample B Female 227.4
Sample C Male 210.3
Sample D Male 147.0
Ventral hippocampus
nTPM: 219.7
Samples: 4

Max nTPM: 253.3
Min nTPM: 184.6
Sample A Female 253.3
Sample B Female 184.6
Sample C Male 215.9
Sample D Male 225.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 188.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 188.6
Samples: 4

Max nTPM: 198.6
Min nTPM: 177.9
Sample A Male 177.9
Sample B Male 193.0
Sample C Female 198.6
Sample D Female 184.7
Hippocampal formation
nTPM: 183.6
Samples: 4

Max nTPM: 215.1
Min nTPM: 169.1
Sample A Male 215.1
Sample B Male 169.1
Sample C Female 169.4
Sample D Female 180.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.1
67765724 Antisense, RP_040916_01_F09, Mouse strain C57BL/6J (56 days, male) 16.1

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